Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.3e-288 995.7 521 100.0
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 5.5e-271 937.2 521 94.8
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.0e-237 826.6 539 83.1
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 2.6e-220 768.8 521 78.9
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.8e-150 536.2 536 59.0
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 2.3e-144 516.5 540 58.5
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 2.4e-141 506.5 545 56.9
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 4.1e-141 505.8 544 55.7
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 3.8e-139 499.2 544 55.9
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.2e-135 487.6 553 54.8
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 3.4e-135 486.1 537 55.3
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.2e-132 477.6 536 54.5
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.5e-132 475.7 539 55.7
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.0e-131 474.6 550 53.5
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.2e-131 473.4 535 53.5
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 2.5e-130 469.9 557 52.6
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.7e-129 466.5 541 54.2
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.2e-127 461.1 541 53.2
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 2.0e-127 460.3 534 54.9
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 3.4e-127 459.5 535 54.8
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.2e-126 456.8 538 53.5
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 3.7e-126 456.1 586 48.6
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 8.3e-126 454.9 544 52.6
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.4e-125 454.1 534 53.6
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 2.4e-125 453.4 536 52.6
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 7.0e-125 451.8 575 51.0
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.0e-124 450.3 536 56.0
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.3e-123 447.6 545 52.7
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.3e-123 447.6 543 52.1
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.8e-123 446.0 570 50.0
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.1e-122 444.5 544 52.4
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.5e-122 444.1 547 52.1
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 5.5e-122 442.2 542 52.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.2e-122 441.8 540 51.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 3.0e-120 436.4 542 51.3
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 8.9e-120 434.9 538 51.7
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-119 434.5 537 52.0
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 9.8e-119 431.4 541 50.1
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 3.7e-118 429.5 591 48.6
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.1e-117 427.9 496 54.0
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 5.4e-117 425.6 476 53.8
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 5.4e-117 425.6 547 50.5
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.7e-116 423.3 555 50.5
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.5e-116 422.9 531 51.8
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 5.9e-116 422.2 536 50.4
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.0e-115 421.4 573 49.2
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.0e-115 421.4 526 51.3
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.7e-115 420.6 462 55.4
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.5e-114 417.5 570 48.8
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.5e-114 417.5 545 49.7
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 6.1e-113 412.1 525 50.7
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.8e-112 410.6 558 48.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.8e-112 410.6 555 47.9
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 2.3e-112 410.2 528 50.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.0e-112 409.5 548 49.5
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.4e-111 406.4 544 47.6
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 4.4e-111 406.0 550 49.5
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.8e-111 405.6 535 48.8
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.8e-111 405.6 535 48.8
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.9e-110 403.3 536 49.3
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.9e-110 403.3 535 50.5
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.4e-109 401.0 526 49.4
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.9e-109 400.6 548 47.6
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 4.1e-109 399.4 579 46.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 9.2e-109 398.3 545 48.1
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.6e-108 397.5 536 47.8
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 3.5e-108 396.4 525 47.2
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.5e-108 396.4 568 47.4
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.3e-107 394.4 552 48.0
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.0e-107 393.3 535 48.6
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.9e-106 390.6 554 46.0
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 5.6e-106 389.0 538 47.8
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 5.6e-106 389.0 536 48.7
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 7.3e-106 388.7 534 48.7
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.6e-105 387.5 532 47.6
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 4.7e-105 386.0 538 47.8
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 4.0e-104 382.9 535 46.4
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.0e-104 382.9 535 45.6
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.0e-103 380.6 531 45.6
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 2.2e-102 377.1 647 42.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.3e-99 367.9 522 46.7
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.9e-98 364.0 529 44.6
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 5.6e-98 362.5 528 44.9
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.6e-97 360.9 528 44.9
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.0e-95 354.0 526 43.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.8e-95 352.4 339 57.2
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.3e-94 351.3 524 44.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.7e-94 350.9 465 48.8
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.9e-94 349.4 444 49.8
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 5.4e-93 345.9 580 42.6
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 4.6e-92 342.8 528 44.1
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 2.3e-91 340.5 458 44.5
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.5e-90 337.8 530 43.6
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 7.3e-90 335.5 529 44.2
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 7.3e-90 335.5 541 44.5
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.5e-87 327.8 554 43.3
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 6.4e-86 322.4 554 41.0
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.4e-85 319.3 483 46.0
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.2e-84 318.2 525 41.3
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 7.8e-84 315.5 520 39.4
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 9.6e-82 308.5 320 55.0
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 4.0e-80 303.1 532 41.2
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 2.2e-78 297.4 484 42.4
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 2.2e-78 297.4 484 42.4
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 5.6e-74 282.7 539 38.6
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.8e-73 280.4 298 54.4
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.4e-72 277.3 541 39.0
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 5.3e-72 276.2 382 51.3
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 2.0e-71 274.2 298 52.7
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.8e-67 261.2 559 37.6
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 6.2e-65 252.7 450 44.0
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 3.1e-64 250.4 451 44.1
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.8e-59 234.6 390 42.8
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 3.4e-55 220.3 486 37.7
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 3.8e-54 216.9 333 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 2.2e-46 191.0 562 31.3
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 2.0e-42 177.9 583 31.2
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 6.3e-41 172.9 515 30.3
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 3.8e-38 163.7 266 39.8
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.6e-36 157.1 404 34.9
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 4.1e-32 143.7 255 42.4
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.6e-28 131.7 175 38.9
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 3.5e-23 114.0 231 35.5
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.2e-18 99.0 203 36.9
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.5e-18 98.6 162 34.0
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.4e-16 92.0 241 33.2
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 4.1e-16 90.5 175 41.7
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 4.1e-16 90.5 130 47.7
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 7.7e-15 86.3 240 34.6
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 2.2e-14 84.7 49 75.5
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.5e-14 83.2 100 52.0
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 8.5e-14 82.8 199 33.2
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 145 38.6
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 3.0e-11 74.3 103 45.6
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 3.0e-11 74.3 103 45.6
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 3.0e-11 74.3 103 45.6
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 3.0e-11 74.3 103 45.6
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 3.0e-11 74.3 103 45.6
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 3.0e-11 74.3 103 45.6
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 7.5e-10 69.7 114 42.1
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 7.0e-08 63.2 37 75.7
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 9.2e-08 62.8 220 28.6


User provided reference genes

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