Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 3.7e-282 974.2 470 100.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 2.7e-269 931.4 486 94.9
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 5.1e-260 900.6 543 83.4
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 6.5e-231 803.9 435 90.3
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.8e-213 745.3 472 75.2
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.3e-210 736.5 475 75.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.9e-210 735.3 472 74.4
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.9e-210 735.3 477 73.0
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.7e-210 734.9 472 74.4
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.9e-207 724.9 474 73.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 5.0e-207 724.5 474 73.2
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.1e-206 723.4 475 73.7
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 7.3e-206 720.7 479 72.2
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 8.1e-205 717.2 474 72.2
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 8.1e-205 717.2 476 73.7
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.4e-204 716.5 471 73.0
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 5.2e-204 714.5 477 73.2
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.2e-204 714.5 479 72.2
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.2e-204 714.5 476 72.1
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.2e-202 709.1 477 71.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.9e-202 708.8 475 72.6
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.1e-201 706.8 478 71.5
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.1e-201 704.9 474 71.9
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 4.1e-201 704.9 472 72.9
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 4.1e-201 704.9 476 71.8
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 6.0e-200 701.0 476 72.5
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.0e-199 700.3 478 71.1
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.3e-199 699.9 477 71.1
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-199 699.9 472 72.5
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-199 699.1 475 72.4
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.3e-199 699.1 473 72.5
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 5.1e-199 698.0 476 72.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.1e-198 696.8 478 71.1
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.5e-198 696.4 474 70.7
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.5e-198 695.7 473 72.3
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 3.3e-198 695.3 472 70.3
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 6.2e-197 691.0 485 69.3
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.4e-196 689.9 479 69.1
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 4.0e-196 688.3 474 70.5
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 5.2e-196 688.0 472 69.3
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 7.6e-195 684.1 475 69.5
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 8.4e-194 680.6 472 69.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.1e-193 677.6 516 66.5
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 7.1e-193 677.6 472 68.0
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 9.2e-193 677.2 470 68.9
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 9.2e-193 677.2 480 69.4
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.7e-192 675.6 475 67.8
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 7.8e-192 674.1 525 64.6
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.0e-191 673.7 475 68.0
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.0e-191 673.7 477 67.9
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.3e-191 672.5 497 67.4
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 3.0e-191 672.2 478 69.7
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-190 670.2 514 65.6
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.1e-190 670.2 500 64.8
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.2e-189 666.8 479 68.1
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.1e-188 663.7 473 67.9
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.8e-188 662.9 480 68.5
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 4.0e-188 661.8 476 68.3
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 9.9e-187 657.1 480 67.1
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.8e-186 655.2 473 65.5
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 9.3e-185 650.6 517 61.7
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 7.8e-184 647.5 515 61.9
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 8.7e-183 644.0 515 61.4
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 8.7e-183 644.0 434 70.5
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.1e-182 643.7 516 61.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.5e-182 643.3 474 67.1
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.5e-182 643.3 515 61.6
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.3e-182 642.1 436 72.0
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 9.6e-182 640.6 479 64.5
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 2.1e-181 639.4 480 65.2
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 8.1e-181 637.5 479 64.3
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.2e-179 633.6 473 66.0
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.5e-179 633.3 516 60.9
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 2.6e-179 632.5 480 64.8
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 5.8e-179 631.3 475 65.7
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.6e-179 630.9 478 65.7
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 9.9e-179 630.6 479 65.6
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 9.9e-179 630.6 481 63.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 6.4e-178 627.9 476 64.7
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 6.4e-178 627.9 477 65.4
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 8.4e-178 627.5 479 64.7
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-177 627.1 535 58.3
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.2e-176 623.6 469 64.6
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.1e-176 622.9 498 61.4
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.9e-175 618.6 488 64.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.1e-174 617.1 476 63.9
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.5e-174 615.9 476 63.7
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 4.3e-174 615.1 468 63.9
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 5.6e-174 614.8 484 64.5
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 7.4e-174 614.4 468 64.1
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.2e-173 611.3 469 64.8
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 6.2e-173 611.3 387 75.5
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 9.9e-171 604.0 471 63.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 9.9e-171 604.0 473 64.1
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.3e-170 603.6 468 63.9
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 2.9e-170 602.4 480 61.7
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.9e-170 602.4 481 63.4
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.9e-170 602.4 439 67.2
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.9e-170 601.7 480 61.0
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.4e-169 600.1 476 63.2
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 2.5e-169 599.4 476 63.7
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 3.2e-169 599.0 404 72.3
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 7.1e-169 597.8 476 63.4
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 2.3e-167 592.8 470 63.0
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 8.7e-167 590.9 479 63.0
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 5.6e-166 588.2 471 62.6
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 4.8e-165 585.1 388 71.9
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 6.9e-164 581.3 473 61.5
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 9.0e-164 580.9 473 61.5
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.5e-163 580.1 391 72.1
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 4.5e-163 578.6 470 60.4
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 4.9e-162 575.1 473 60.7
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 4.9e-162 575.1 473 60.7
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 4.9e-162 575.1 385 72.2
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 2.3e-159 566.2 472 59.7
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 2.2e-154 549.7 435 64.6
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.3e-149 531.6 490 54.1
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.1e-148 530.8 436 63.1
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 6.9e-148 528.1 495 54.5
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.7e-146 523.5 463 57.9
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 8.5e-146 521.2 289 83.4
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.2e-145 518.1 346 74.0
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.7e-144 515.4 505 52.5
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.4e-142 508.8 398 63.8
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 9.7e-142 507.7 437 59.0
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.1e-140 504.2 396 62.1
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.6e-136 490.3 460 54.1
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.1e-136 490.0 392 59.9
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.1e-132 476.1 281 76.9
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.5e-129 465.3 285 73.0
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 8.0e-128 461.5 475 51.4
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.4e-127 460.7 319 65.8
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 3.7e-117 426.0 315 62.2
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 3.5e-115 419.5 527 43.3
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 3.3e-113 412.9 285 64.6
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.5e-110 404.1 552 41.7
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.7e-107 393.3 292 61.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.6e-104 382.9 299 63.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 3.7e-101 372.9 537 39.9
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.3e-98 364.4 469 40.5
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 3.0e-98 363.2 300 58.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.4e-92 344.4 302 60.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.2e-88 331.3 371 48.5
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 9.9e-70 268.5 427 39.8
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.5e-62 244.6 187 65.2
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 4.5e-62 243.0 203 59.1
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.5e-49 201.4 177 59.9
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.4e-47 194.9 139 69.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 6.5e-45 186.0 193 54.9
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 2.5e-41 174.1 185 52.4
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 9.7e-41 172.2 127 70.1
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.4e-38 163.7 108 72.2
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-37 161.8 100 76.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.5e-37 159.5 92 79.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.2e-35 155.2 127 54.3
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.1e-35 154.5 92 76.1
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.6e-35 153.3 178 47.2
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.5e-33 148.3 144 52.1
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.5e-33 148.3 144 52.1
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 9.1e-31 139.0 84 72.6
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 9.1e-31 139.0 84 72.6
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 6.5e-29 132.9 152 47.4
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.0e-26 124.0 114 56.1
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 5.7e-25 119.8 188 41.0
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.0e-18 99.0 65 70.8
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.6e-11 75.1 45 73.3


User provided reference genes

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