Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 0.0e+00 1425.2 711 100.0
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 0.0e+00 1310.0 706 92.6
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 0.0e+00 1300.8 756 88.1
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 0.0e+00 1211.8 715 84.9
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 7.3e-258 894.0 717 62.8
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 1.6e-249 866.3 711 62.9
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 2.4e-245 852.4 717 60.5
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 8.6e-243 844.0 720 60.6
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 8.1e-241 837.4 715 60.1
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.4e-237 826.6 722 59.7
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 4.2e-237 825.1 717 59.8
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 8.1e-233 810.8 716 57.8
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.4e-232 810.1 715 59.6
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.8e-232 809.7 717 58.0
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 4.4e-231 805.1 717 57.3
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 4.2e-229 798.5 681 59.8
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 9.3e-229 797.3 721 57.3
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 1.1e-226 790.4 715 57.1
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 9.6e-226 787.3 712 57.4
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 2.8e-225 785.8 711 56.3
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 2.6e-223 779.2 712 55.9
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.9e-222 775.8 714 57.3
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 2.9e-222 775.8 719 56.3
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.9e-222 775.8 716 57.3
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.1e-221 773.9 714 57.4
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.9e-221 773.1 680 58.5
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 2.4e-221 772.7 715 55.5
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 4.6e-220 768.5 714 57.3
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.5e-218 762.7 711 55.1
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.7e-214 750.0 717 55.8
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.2e-214 749.6 667 57.9
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 6.5e-214 748.0 723 55.3
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 8.4e-214 747.7 706 55.5
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 1.1e-213 747.3 716 55.7
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 5.5e-213 745.0 703 54.6
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.8e-211 740.0 720 54.7
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 3.9e-211 738.8 737 54.1
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.9e-210 736.5 646 60.5
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 9.0e-208 727.6 667 56.7
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 7.6e-207 724.5 683 55.6
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 2.5e-205 719.5 715 54.4
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.9e-204 714.5 702 54.6
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 4.3e-202 708.8 710 52.8
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 1.1e-200 704.1 703 52.8
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 4.5e-199 698.7 711 54.1
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.9e-199 698.4 739 51.3
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.3e-198 697.2 549 65.4
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 6.5e-198 694.9 706 51.6
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 3.2e-197 692.6 717 52.6
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 4.2e-197 692.2 709 51.6
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 7.2e-197 691.4 731 50.5
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 9.4e-197 691.0 700 51.9
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 8.8e-195 684.5 713 52.6
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.7e-193 680.2 700 52.3
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 1.7e-193 680.2 732 51.4
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 3.7e-193 679.1 732 50.3
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 4.8e-193 678.7 714 51.0
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 2.6e-191 672.9 714 50.8
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.5e-189 666.4 709 51.8
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 2.1e-188 663.3 666 53.3
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 7.9e-188 661.4 675 51.6
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 1.0e-187 661.0 705 50.8
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 2.3e-187 659.8 717 50.2
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.6e-186 656.4 710 50.7
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 3.3e-186 656.0 720 49.4
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.7e-185 653.7 710 51.1
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 4.8e-185 652.1 712 49.9
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 6.3e-185 651.7 719 50.5
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 5.3e-184 648.7 715 50.1
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 7.7e-183 644.8 711 51.3
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 2.2e-182 643.3 717 50.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 2.2e-182 643.3 719 49.9
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 6.5e-182 641.7 704 50.3
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.5e-181 640.6 704 50.1
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 2.5e-181 639.8 703 50.1
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.1e-180 636.7 706 50.8
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 3.6e-180 636.0 714 49.2
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 6.1e-180 635.2 711 50.2
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 1.1e-176 624.4 730 47.9
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 9.1e-176 621.3 714 48.3
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.6e-175 620.5 703 48.4
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.0e-175 620.2 756 45.9
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.0e-174 617.8 678 50.4
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.9e-173 613.6 733 48.8
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.2e-167 594.3 659 51.3
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 6.5e-166 588.6 683 47.4
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 8.5e-166 588.2 721 45.9
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 8.5e-166 588.2 717 46.9
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.5e-165 587.4 676 48.7
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 5.5e-165 585.5 665 48.7
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 1.6e-156 557.4 685 46.4
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 7.5e-154 548.5 754 41.8
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 6.4e-153 545.4 641 50.5
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 4.6e-151 539.3 712 44.8
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 5.6e-149 532.3 553 53.2
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 6.6e-142 508.8 718 42.3
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 3.3e-141 506.5 526 54.2
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 2.3e-139 500.4 512 53.7
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.4e-138 496.5 783 39.5
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 5.4e-136 489.2 773 38.2
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 9.2e-136 488.4 514 52.9
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 3.5e-135 486.5 513 52.6
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 4.7e-124 449.5 697 38.2
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.4e-123 448.0 751 38.1
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 2.6e-122 443.7 632 39.9
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.6e-117 426.0 484 51.7
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.6e-116 423.3 423 54.1
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 5.3e-115 419.5 720 36.7
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.9e-114 415.2 498 47.0
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 5.4e-112 409.5 277 70.8
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 6.2e-108 396.0 262 70.6
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 1.2e-106 391.7 647 38.6
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.1e-104 385.2 372 54.3
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.7e-103 380.6 811 33.7
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 1.3e-97 361.7 268 67.2
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.9e-85 321.2 222 66.2
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.1e-75 288.9 531 36.7
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 1.8e-67 261.5 276 47.1
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 7.2e-64 249.6 341 43.1
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 8.8e-54 216.1 121 78.5
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 5.7e-53 213.4 317 41.0
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 2.1e-31 141.7 103 68.9
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.2e-26 125.9 153 45.8
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.7e-20 104.4 180 40.0
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 6.4e-20 103.6 134 46.3
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.1e-19 102.8 154 38.3
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.9e-19 102.1 167 43.7
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 1.7e-17 95.5 132 44.7
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.0e-14 84.3 83 53.0
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 1.5e-13 82.4 153 40.5
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 1.1e-11 76.3 98 45.9
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 5.1e-09 67.4 59 50.8
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 6.6e-09 67.0 121 32.2
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 1.4e-06 59.3 46 58.7
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 1.8e-06 58.9 92 38.0


User provided reference genes

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