Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.1e-65 253.1 124 100.0
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 1.7e-40 169.5 107 77.6
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 2.9e-37 158.7 107 74.8
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 2.5e-36 155.6 107 72.0
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 1.2e-27 126.7 107 58.9
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 2.9e-13 79.0 86 51.2
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 3.8e-13 78.6 102 42.2
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 6.5e-13 77.8 126 39.7
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 1.5e-12 76.6 99 42.4
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 2.5e-12 75.9 114 42.1
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 3.2e-12 75.5 94 46.8
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 4.2e-12 75.1 104 39.4
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 5.5e-12 74.7 91 48.4
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 7.2e-12 74.3 104 41.3
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 7.2e-12 74.3 112 42.9
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 1.2e-11 73.6 113 43.4
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.6e-11 73.2 86 45.3
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 1.6e-11 73.2 87 44.8
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 2.1e-11 72.8 106 41.5
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 2.7e-11 72.4 105 41.0
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 3.6e-11 72.0 100 42.0
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 4.7e-11 71.6 135 34.8
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 8.0e-11 70.9 114 38.6
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 8.0e-11 70.9 87 42.5
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 1.4e-10 70.1 115 37.4
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 1.4e-10 70.1 94 42.6
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 1.4e-10 70.1 102 44.1
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 1.4e-10 70.1 90 38.9
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 1.8e-10 69.7 113 39.8
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 2.3e-10 69.3 88 43.2
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 3.0e-10 68.9 94 40.4
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 3.0e-10 68.9 93 46.2
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 3.0e-10 68.9 110 37.3
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 4.0e-10 68.6 108 39.8
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 5.2e-10 68.2 90 40.0
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 5.2e-10 68.2 101 37.6
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 5.2e-10 68.2 101 37.6
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 6.8e-10 67.8 98 39.8
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 6.8e-10 67.8 86 45.3
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 6.8e-10 67.8 83 49.4
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 6.8e-10 67.8 91 39.6
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 6.8e-10 67.8 98 40.8
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 6.8e-10 67.8 96 43.8
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 8.8e-10 67.4 106 34.9
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 8.8e-10 67.4 86 38.4
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 1.2e-09 67.0 92 42.4
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 1.5e-09 66.6 100 38.0
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 1.5e-09 66.6 101 37.6
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.5e-09 66.6 96 39.6
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 1.5e-09 66.6 88 44.3
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 2.0e-09 66.2 103 42.7
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 3.4e-09 65.5 96 38.5
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 3.4e-09 65.5 83 42.2
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 4.4e-09 65.1 88 40.9
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 4.4e-09 65.1 87 41.4
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 5.7e-09 64.7 113 36.3
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 7.5e-09 64.3 91 38.5
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 1.3e-08 63.5 86 39.5
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 1.3e-08 63.5 88 43.2
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 1.3e-08 63.5 87 42.5
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.3e-08 63.5 108 35.2
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 1.3e-08 63.5 110 40.0
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 1.7e-08 63.2 87 36.8
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.7e-08 63.2 112 33.9
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.7e-08 63.2 112 33.9
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 2.2e-08 62.8 104 34.6
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.8e-08 62.4 87 39.1
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 2.8e-08 62.4 107 41.1
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 3.7e-08 62.0 105 39.0
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 3.7e-08 62.0 87 39.1
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 4.9e-08 61.6 93 41.9
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 4.9e-08 61.6 92 40.2
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 6.3e-08 61.2 99 38.4
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 6.3e-08 61.2 108 40.7
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 6.3e-08 61.2 108 40.7
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 6.3e-08 61.2 89 36.0
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 8.3e-08 60.8 112 33.0
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.4e-07 60.1 112 32.1
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.8e-07 59.7 86 40.7
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.8e-07 59.7 112 32.1
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 1.8e-07 59.7 91 37.4
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 2.4e-07 59.3 91 44.0
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 3.1e-07 58.9 90 37.8
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 5.4e-07 58.2 91 38.5
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 5.4e-07 58.2 92 37.0
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 5.4e-07 58.2 104 36.5
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 9.2e-07 57.4 94 39.4
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 1.6e-06 56.6 105 38.1
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 1.6e-06 56.6 82 36.6
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 5.9e-06 54.7 88 39.8


User provided reference genes

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