Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G031840 Cucumis sativus L. HOM05D011982 ORTHO05D000001 2.0e-49 198.7 99 100.0
MELO3C029684.2 Cucumis melo HOM05D011982 ORTHO05D000001 1.3e-27 126.3 96 71.9
CsaV3_5G012380 Cucumis sativus L. HOM05D011982 ORTHO05D000001 1.0e-24 116.7 101 65.3
MELO3C033414.2 Cucumis melo HOM05D011982 ORTHO05D000001 3.5e-17 91.7 80 63.8
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 7.8e-17 90.5 85 54.1
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 3.9e-16 88.2 68 66.2
CsaV3_2G031910 Cucumis sativus L. HOM05D011982 ORTHO05D000001 4.3e-15 84.7 99 49.5
Hma1.2p1_1358F.1_g277990 Hydrangea macrophylla HOM05D011982 ORTHO05D000001 4.3e-15 84.7 89 42.7
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 5.6e-15 84.3 84 51.2
Dinv05898 Davidia involucrata HOM05D013570 ORTHO05D000001 4.7e-14 81.3 85 48.2
MELO3C028804.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.1e-13 80.1 42 88.1
Sed0021481 Sechium edule HOM05D000002 ORTHO05D000001 3.1e-13 78.6 71 52.1
Sed0010177 Sechium edule HOM05D000002 ORTHO05D000001 4.0e-13 78.2 68 55.9
Hma1.2p1_2812F.1_g328890 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.6e-12 75.5 84 42.9
Sed0015294 Sechium edule HOM05D011982 ORTHO05D000001 5.8e-12 74.3 81 46.9
MELO3C008228.2 Cucumis melo HOM05D011982 ORTHO05D000001 7.5e-12 73.9 66 57.6
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-11 71.6 80 43.8
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-11 71.6 80 43.8
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.4e-11 70.9 80 43.8
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 6.4e-11 70.9 68 42.6
CsaV3_1G045000 Cucumis sativus L. HOM05D011982 ORTHO05D000001 1.1e-10 70.1 68 50.0
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-10 69.3 80 43.8
CSS0041837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-10 68.6 80 43.8
Nn7g37430 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.1e-09 65.9 82 40.2
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-09 65.1 75 42.7
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.0e-09 64.3 85 38.8
TAR084G0004 Trochodendron aralioides HOM05D001435 ORTHO05D001304 6.0e-09 64.3 71 46.5
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 7.8e-09 63.9 64 40.6
CSS0005755 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-08 63.5 79 38.0
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-08 63.5 75 42.7
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-08 63.2 66 40.9
ClCG10G003750 Citrullus lanatus HOM05D011982 ORTHO05D000001 2.3e-08 62.4 58 55.2
CSS0020834 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.1e-08 61.2 77 41.6
Rhsim06G0171300 Rhododendron simsii HOM05D001152 ORTHO05D000967 5.1e-08 61.2 73 37.0
ClCG05G015520 Citrullus lanatus HOM05D011982 ORTHO05D000001 6.6e-08 60.8 45 62.2
QL04p020492 Quercus lobata HOM05D013570 ORTHO05D000001 6.6e-08 60.8 69 37.7
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 6.6e-08 60.8 45 55.6
ClCG06G014630 Citrullus lanatus HOM05D011982 ORTHO05D000001 8.6e-08 60.5 47 59.6
QL04p020203 Quercus lobata HOM05D013570 ORTHO05D000001 8.6e-08 60.5 69 37.7
CSS0007133 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-07 60.1 61 41.0
MD05G1333300 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-07 60.1 97 36.1
CSS0018413 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-07 59.7 73 37.0
RcHm_v2.0_Chr7g0206011 Rosa chinensis HOM05D000002 ORTHO05D000001 1.5e-07 59.7 76 34.2
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-07 59.3 63 36.5
CSS0020274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-07 58.9 74 35.1
QL04p019972 Quercus lobata HOM05D013570 ORTHO05D000001 2.5e-07 58.9 69 36.2
QL04p020087 Quercus lobata HOM05D013570 ORTHO05D000001 2.5e-07 58.9 69 36.2
FvH4_5g20624 Fragaria vesca HOM05D000002 ORTHO05D000001 3.3e-07 58.5 82 34.1
Dinv03566 Davidia involucrata HOM05D013570 ORTHO05D000001 4.3e-07 58.2 78 42.3
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.3e-07 58.2 63 39.7
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.6e-07 57.8 72 38.9
CSS0025666 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-07 57.4 74 35.1
QL02p051144 Quercus lobata HOM05D013570 ORTHO05D000001 7.3e-07 57.4 78 32.1
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 7.3e-07 57.4 64 35.9
CSS0021283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.5e-07 57.0 73 38.4
Nn1g01357 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.5e-07 57.0 67 40.3
RcHm_v2.0_Chr7g0206441 Rosa chinensis HOM05D000002 ORTHO05D000001 9.5e-07 57.0 55 47.3
Peaxi162Scf01254g00010 Petunia axillaris HOM05D015337 ORTHO05D019322 1.2e-06 56.6 86 39.5
QL08p005220 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-06 56.6 69 34.8
RhsimUnG0073400 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.2e-06 56.6 73 38.4
Rhsim02G0181800 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-06 56.2 87 36.8
Rhsim07G0051100 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-06 56.2 92 38.0
TAR696G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.6e-06 56.2 88 35.2
CSS0045443 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-06 55.8 61 36.1
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-06 55.8 75 38.7
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.1e-06 55.8 61 41.0
MD13G1099200 Malus domestica HOM05D000002 ORTHO05D000001 2.8e-06 55.5 69 39.1
Rhsim12G0142100 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.8e-06 55.5 60 40.0
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 2.8e-06 55.5 49 46.9
QL02p077346 Quercus lobata HOM05D000002 ORTHO05D000001 3.6e-06 55.1 69 40.6
Rhsim03G0193600 Rhododendron simsii HOM05D000100 ORTHO05D000052 3.6e-06 55.1 77 39.0
CSS0011881 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-06 54.7 73 38.4
CSS0027920 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-06 54.7 73 37.0
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.2e-06 54.3 83 33.7
Manes.10G109626 Manihot esculenta HOM05D016702 ORTHO05D000001 6.2e-06 54.3 81 37.0
Nitab4.5_0000164g0090 Nicotiana tabacum HOM05D002833 ORTHO05D003210 6.2e-06 54.3 85 37.6
Nitab4.5_0006115g0020 Nicotiana tabacum HOM05D002833 ORTHO05D000001 6.2e-06 54.3 93 35.5
CSS0045631 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-06 53.9 83 34.9
Hma1.2p1_0660F.1_g197730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.1e-06 53.9 77 37.7
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 8.1e-06 53.9 87 39.1


User provided reference genes

Program Settings