Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.0e-63 246.5 119 100.0
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.5e-62 241.9 119 97.5
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.8e-60 235.7 119 94.1
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 5.2e-60 234.2 120 95.0
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 8.4e-58 226.9 120 92.5
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.4e-52 209.5 115 84.3
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.8e-52 209.1 115 83.5
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 3.1e-52 208.4 115 83.5
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 3.1e-52 208.4 112 85.7
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 6.9e-52 207.2 112 83.9
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.0e-51 205.7 112 83.0
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 2.6e-51 205.3 111 82.9
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.6e-51 205.3 115 81.7
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 7.6e-51 203.8 115 80.9
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.9e-50 201.8 111 82.9
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.4e-49 199.5 117 77.8
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.4e-49 199.5 111 84.7
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.9e-49 199.1 117 77.8
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.4e-49 198.7 111 82.0
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 2.4e-49 198.7 115 78.3
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 3.2e-49 198.4 112 79.5
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 4.2e-49 198.0 111 80.2
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 9.3e-49 196.8 117 76.9
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.2e-48 196.4 111 81.1
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.1e-48 195.7 112 81.2
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 2.1e-48 195.7 111 82.0
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.1e-48 195.7 111 80.2
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 2.1e-48 195.7 117 76.1
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.7e-48 195.3 110 81.8
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.6e-48 194.5 117 76.9
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 6.0e-48 194.1 117 76.9
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 7.9e-48 193.7 110 80.9
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.9e-48 193.7 117 76.1
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.0e-47 193.4 111 81.1
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.0e-47 193.4 111 78.4
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.0e-47 193.4 116 77.6
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.3e-47 193.0 115 77.4
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.3e-47 192.2 115 76.5
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 3.0e-47 191.8 115 76.5
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.0e-47 191.8 117 75.2
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 3.0e-47 191.8 111 78.4
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 3.9e-47 191.4 111 78.4
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.1e-46 189.9 112 76.8
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 1.9e-46 189.1 115 74.8
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.9e-46 189.1 111 76.6
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 78.4
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 78.4
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.3e-46 188.3 111 77.5
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.3e-46 188.0 117 74.4
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 5.6e-46 187.6 111 76.6
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 1.3e-45 186.4 111 77.5
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.6e-45 186.0 115 74.8
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.1e-45 185.7 110 76.4
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 2.8e-45 185.3 112 75.9
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 3.6e-45 184.9 110 76.4
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 4.8e-45 184.5 111 76.6
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 4.8e-45 184.5 115 73.9
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 4.8e-45 184.5 115 73.9
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 6.2e-45 184.1 111 74.8
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 6.2e-45 184.1 111 76.6
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 8.1e-45 183.7 111 77.5
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 8.1e-45 183.7 111 77.5
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.1e-44 183.3 111 74.8
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.1e-44 183.3 112 75.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.4e-44 183.0 115 74.8
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.4e-44 183.0 115 74.8
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 1.4e-44 183.0 115 73.9
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-44 182.6 111 73.9
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.8e-44 182.6 111 73.9
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.8e-44 182.6 111 73.0
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.8e-44 182.6 115 73.0
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.8e-44 182.6 115 73.0
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.8e-44 182.6 110 74.5
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 3.1e-44 181.8 111 73.9
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.1e-44 181.8 111 73.0
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 4.0e-44 181.4 111 73.9
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 5.3e-44 181.0 111 75.7
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.2e-43 179.9 111 74.8
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 73.0
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 3.4e-43 178.3 111 73.0
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 3.4e-43 178.3 112 75.9
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 4.5e-43 177.9 111 73.9
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 74.8
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.9
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 2.9e-42 175.3 111 71.2
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.9e-42 175.3 111 73.9
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 4.9e-42 174.5 111 71.2
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 4.9e-42 174.5 111 71.2
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 1.1e-41 173.3 132 63.6
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 2.4e-41 172.2 110 70.0
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 3.2e-41 171.8 111 73.0
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 5.4e-41 171.0 111 71.2
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.1e-40 169.1 126 61.9
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 2.1e-40 169.1 118 67.8
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 7.9e-40 167.2 118 66.9
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.0e-39 166.8 105 73.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.0e-39 166.8 139 60.4
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.8e-39 166.0 111 68.5
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 6.7e-39 164.1 97 74.2
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.5e-38 162.9 105 72.4
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.9e-38 162.5 111 67.6
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 2.5e-38 162.2 97 75.3
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 3.3e-38 161.8 109 68.8
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.4e-36 156.4 85 80.0
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.6e-35 152.1 109 63.3
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.0e-34 150.2 110 62.7
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.4e-33 146.4 109 66.1
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 4.2e-33 144.8 101 67.3
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 9.3e-33 143.7 85 72.9
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.7e-32 142.1 81 76.5
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 2.7e-32 142.1 129 55.8
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.1e-30 136.7 87 75.9
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.1e-30 136.7 118 62.7
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 9.6e-30 133.7 174 44.3
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.6e-29 132.9 88 69.3
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.1e-29 132.5 110 55.5
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 2.4e-28 129.0 109 55.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 2.4e-28 129.0 70 87.1
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 2.6e-27 125.6 75 77.3
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 2.6e-27 125.6 75 77.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.8e-26 121.7 67 82.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.1e-25 120.2 70 81.4
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.1e-25 120.2 71 74.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 2.5e-25 119.0 104 51.9
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 1.3e-23 113.2 72 69.4
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 9.7e-22 107.1 110 50.0
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.8e-21 104.8 54 83.3
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.4e-20 103.2 82 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 7.7e-19 97.4 135 36.3
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.7e-18 96.3 61 73.8
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 8.5e-18 94.0 54 75.9
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.8e-15 86.3 51 78.4
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 3.3e-14 82.0 43 81.4
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 5.3e-12 74.7 48 72.9
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 8.5e-10 67.4 60 55.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 3.6e-08 62.0 38 71.1
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.0e-07 60.5 54 50.0


User provided reference genes

Program Settings