Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 2191.4 1110 100.0
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 0.0e+00 1921.0 1140 87.5
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1678.7 1110 77.0
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1158.7 1119 55.1
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1157.5 1128 55.1
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1156.0 1094 56.6
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1150.2 1121 55.0
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1125.9 1112 54.2
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1121.3 1119 53.6
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1120.5 1053 56.1
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1118.2 1118 53.6
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1117.4 1104 54.0
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1115.9 1118 52.9
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1114.4 1108 54.1
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1111.7 1100 54.0
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1111.3 1121 53.8
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1109.7 1103 53.4
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1103.6 1116 53.7
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1102.0 1107 53.8
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1100.9 1122 53.7
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1098.6 1120 52.7
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1097.4 1120 52.5
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 2.3e-311 1072.4 1116 51.6
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 1.5e-310 1069.7 1110 52.1
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 7.5e-310 1067.4 1117 51.7
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 1.8e-308 1062.8 1110 51.4
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 3.2e-308 1062.0 1096 52.9
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 9.2e-308 1060.4 1116 51.0
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 3.5e-307 1058.5 1111 52.4
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 8.6e-306 1053.9 1103 52.3
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 1.5e-305 1053.1 1109 50.6
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 5.4e-300 1034.6 1104 51.2
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 1.2e-299 1033.5 1106 50.4
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 5.0e-298 1028.1 1104 51.7
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 6.2e-296 1021.1 1094 49.8
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 2.9e-293 1012.3 1121 49.9
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 4.9e-293 1011.5 1106 47.8
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 5.4e-292 1008.1 1120 49.6
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 6.0e-291 1004.6 1109 49.4
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 7.8e-291 1004.2 1118 47.4
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 4.7e-288 995.0 1107 50.3
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 8.9e-287 990.7 1051 50.6
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 1.3e-282 976.9 1117 48.4
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 1.1e-279 967.2 1118 49.6
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 3.1e-279 965.7 1096 47.6
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 8.9e-279 964.1 1099 47.7
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 7.6e-278 961.1 1115 47.2
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 4.9e-277 958.4 1120 46.9
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 6.4e-277 958.0 1118 47.1
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 1.4e-276 956.8 1137 47.1
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 3.5e-275 952.2 1134 45.1
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 1.7e-274 949.9 1031 51.5
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 3.3e-273 945.7 1101 46.9
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 7.3e-273 944.5 912 54.1
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 9.6e-273 944.1 1105 47.0
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.4e-271 940.3 1099 46.8
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 2.6e-270 936.0 1141 45.8
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 5.8e-270 934.9 1137 45.9
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 4.9e-269 931.8 694 71.6
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 6.2e-264 914.8 1115 47.0
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.1e-263 914.1 1071 47.2
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 9.3e-260 901.0 876 53.8
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 9.0e-255 884.4 964 51.3
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 1.7e-253 880.2 1110 45.0
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 3.0e-250 869.4 1058 46.9
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 2.0e-246 856.7 826 56.1
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 2.9e-245 852.8 952 50.3
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 6.5e-245 851.7 1122 44.5
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 8.7e-242 841.3 1114 43.4
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 1.5e-241 840.5 987 47.1
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 9.4e-236 821.2 827 53.2
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 2.2e-232 810.1 910 48.4
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 1.2e-230 804.3 1127 41.1
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.2e-230 804.3 1126 41.4
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 5.5e-228 795.4 1116 41.1
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 9.4e-228 794.7 1112 42.0
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.4e-226 790.8 951 48.4
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 3.9e-226 789.3 1169 41.5
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.0e-225 786.9 1102 39.8
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 1.2e-214 751.1 1101 40.4
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 3.5e-214 749.6 992 43.8
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 3.4e-201 706.4 441 82.3
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 1.2e-190 671.4 727 50.9
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.1e-183 648.3 778 45.0
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.7e-176 624.4 627 52.0
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 8.4e-160 568.9 806 42.9
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 8.1e-155 552.4 753 42.2
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 9.9e-153 545.4 1098 33.4
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.5e-148 531.6 920 39.1
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 3.3e-140 503.8 1167 30.7
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 1.0e-133 482.3 1352 27.4
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.2e-110 405.6 459 51.0
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.3e-91 340.1 390 49.5
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 6.8e-85 320.1 335 51.6
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.3e-83 315.8 343 51.6
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 2.2e-83 315.1 333 51.4
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.9e-83 313.9 1252 26.3
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.2e-81 309.3 350 48.6
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.0e-77 296.2 589 34.5
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 8.0e-70 270.0 297 47.8
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 8.9e-69 266.5 309 46.9
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 2.4e-66 258.5 288 47.9
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 2.3e-64 251.9 280 49.3
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 7.8e-57 226.9 394 38.3
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 3.3e-55 221.5 231 55.4
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 9.2e-50 203.4 192 52.6
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 3.4e-44 184.9 202 47.5
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 7.6e-44 183.7 261 42.1
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.3e-43 183.0 155 58.7
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.6e-41 174.5 259 37.5
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 4.3e-39 167.9 173 46.8
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.8e-38 165.2 167 50.3
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.2e-38 164.1 385 31.4
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 3.2e-34 151.8 318 33.6
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 2.3e-32 145.6 141 52.5
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 8.1e-30 137.1 487 26.3
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 5.3e-29 134.4 462 26.0
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 2.9e-19 102.1 121 51.2
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.9e-19 102.1 121 51.2
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 3.8e-19 101.7 132 49.2
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.4e-18 99.8 121 49.6
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.1e-17 95.9 137 35.8
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 2.3e-16 92.4 731 21.2
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.8e-14 84.7 137 38.7
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.4e-13 82.4 88 51.1
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.6e-09 69.7 85 38.8
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-09 68.2 242 24.0
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 5.1e-08 64.7 169 28.4
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 7.4e-07 60.8 46 65.2
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 1.3e-06 60.1 62 45.2
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 3.7e-06 58.5 96 41.7


User provided reference genes

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