Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.2e-83 312.4 175 100.0
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 5.7e-71 271.2 175 89.1
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 9.7e-71 270.4 171 91.2
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 9.1e-53 210.7 191 69.6
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 3.8e-43 178.7 171 64.9
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.8e-40 169.9 176 60.8
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 4.9e-38 161.8 176 60.2
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 4.9e-38 161.8 176 60.2
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 9.2e-37 157.5 164 62.8
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 7.8e-36 154.5 169 59.2
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 1.7e-35 153.3 178 60.1
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 2.3e-35 152.9 169 61.5
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 2.3e-35 152.9 166 59.6
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 5.0e-35 151.8 173 57.8
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 4.3e-34 148.7 168 60.7
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.3e-34 148.7 170 59.4
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 7.3e-34 147.9 149 63.1
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 9.5e-34 147.5 176 58.5
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 9.5e-34 147.5 149 62.4
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 4.0e-32 142.1 175 54.3
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 4.0e-32 142.1 141 62.4
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 2.0e-31 139.8 159 62.3
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.4e-31 139.0 168 54.8
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 5.8e-31 138.3 161 55.9
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 7.5e-31 137.9 177 53.7
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 4.9e-30 135.2 168 57.7
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 6.4e-30 134.8 162 54.3
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.4e-29 133.7 176 53.4
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 2.4e-29 132.9 159 59.1
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 9.2e-29 131.0 176 54.5
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 1.2e-28 130.6 173 51.4
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.0e-28 129.8 168 52.4
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 3.5e-28 129.0 194 50.0
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 4.6e-28 128.6 172 52.3
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 6.0e-28 128.3 166 54.2
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.3e-27 127.1 166 54.2
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 1.7e-27 126.7 186 49.5
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 1.7e-27 126.7 149 58.4
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 2.3e-27 126.3 174 52.3
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 2.3e-27 126.3 159 52.2
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 2.5e-26 122.9 169 53.3
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 2.5e-26 122.9 177 50.8
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 3.3e-26 122.5 179 51.4
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 4.3e-26 122.1 167 53.9
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 7.3e-26 121.3 186 49.5
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 9.5e-26 120.9 178 51.7
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 2.1e-25 119.8 165 52.7
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.8e-25 119.4 169 50.3
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 3.6e-25 119.0 169 49.7
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.2e-25 118.2 168 54.2
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 8.1e-25 117.9 163 49.7
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 8.1e-25 117.9 163 49.7
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 1.1e-24 117.5 159 52.2
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.4e-24 117.1 138 53.6
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 2.3e-24 116.3 174 49.4
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 4.0e-24 115.5 169 49.1
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 5.2e-24 115.2 167 49.7
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 5.2e-24 115.2 167 49.7
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 8.9e-24 114.4 165 51.5
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 8.9e-24 114.4 176 49.4
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 1.5e-23 113.6 171 49.7
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 1.5e-23 113.6 160 50.6
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 1.5e-23 113.6 160 50.6
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.5e-23 113.6 159 53.5
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 2.0e-23 113.2 159 49.1
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 2.0e-23 113.2 182 47.3
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 4.4e-23 112.1 160 50.0
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 4.4e-23 112.1 172 48.3
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 1.7e-22 110.2 170 48.2
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 1.7e-22 110.2 170 48.2
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.9e-22 109.4 177 48.6
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 1.4e-21 107.1 169 49.7
Dinv24076 Davidia involucrata HOM05D003436 ORTHO05D003674 3.2e-21 105.9 131 55.7
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 4.1e-21 105.5 170 48.2
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 5.4e-21 105.1 171 48.5
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 9.2e-21 104.4 168 48.8
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 9.2e-21 104.4 167 46.7
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 1.2e-20 104.0 169 46.2
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 2.1e-20 103.2 168 47.6
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 2.1e-20 103.2 168 47.6
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 6.0e-20 101.7 168 45.8
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.0e-19 100.9 168 46.4
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.0e-19 100.9 166 48.8
TPR.G27779 Trifolium pratense HOM05D003436 ORTHO05D003674 1.7e-19 100.1 124 53.2
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 2.3e-19 99.8 159 47.8
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 3.9e-19 99.0 167 47.3
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 2.5e-18 96.3 157 46.5
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 1.2e-17 94.0 167 45.5
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 1.2e-17 94.0 176 47.7
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 4.7e-17 92.0 169 43.2
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 4.7e-17 92.0 79 64.6
HanXRQChr02g0048381 Helianthus annuus HOM05D003436 ORTHO05D003674 6.2e-17 91.7 128 51.6
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 8.1e-17 91.3 144 46.5
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.3e-16 89.7 175 46.3
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.3e-16 89.7 82 63.4
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 5.2e-16 88.6 82 63.4
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 1.2e-15 87.4 185 45.9
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 1.2e-15 87.4 104 56.7
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 1.2e-15 87.4 104 55.8
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 2.6e-15 86.3 165 44.8
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 3.4e-15 85.9 147 45.6
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 4.4e-15 85.5 125 52.0
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 4.4e-15 85.5 148 47.3
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 5.8e-15 85.1 131 51.1
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.6e-15 84.7 158 46.8
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 9.9e-15 84.3 170 45.3
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 9.9e-15 84.3 95 58.9
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 1.3e-14 84.0 104 56.7
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.3e-14 84.0 208 40.4
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 1.3e-14 84.0 168 46.4
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 2.2e-14 83.2 144 45.8
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 2.9e-14 82.8 84 58.3
Zm00001eb414650 Zea mays HOM05D003436 ORTHO05D003674 2.9e-14 82.8 174 44.3
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 4.9e-14 82.0 87 58.6
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 4.9e-14 82.0 94 57.4
Lsat_1_v5_gn_5_146120 Lactuca sativa HOM05D003436 ORTHO05D003674 6.4e-14 81.6 77 61.0
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 8.4e-14 81.3 103 51.5
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 1.1e-13 80.9 144 46.5
Cfa020171 Carpinus fangiana HOM05D003436 ORTHO05D003674 1.1e-13 80.9 156 42.3
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.9e-13 80.1 94 55.3
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.1e-13 78.2 164 45.7
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 1.2e-12 77.4 114 51.8
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.2e-12 77.4 100 52.0
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.2e-12 77.4 104 52.9
Lsat_1_v5_gn_8_74401 Lactuca sativa HOM05D003436 ORTHO05D003674 1.6e-12 77.0 90 57.8
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 1.6e-12 77.0 185 43.2
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.6e-12 77.0 104 51.9
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 2.1e-12 76.6 100 50.0
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.1e-12 76.6 95 54.7
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 3.5e-12 75.9 98 55.1
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 4.6e-12 75.5 111 50.5
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 4.6e-12 75.5 111 50.5
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 6.0e-12 75.1 106 48.1
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 7.8e-12 74.7 90 52.2
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 1.0e-11 74.3 104 50.0
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 1.3e-11 73.9 106 49.1
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 1.3e-11 73.9 147 42.2
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.7e-11 73.6 159 40.3
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 1.7e-11 73.6 187 40.1
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.3e-11 73.2 87 50.6
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 3.0e-11 72.8 112 49.1
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 3.9e-11 72.4 64 62.5
Os08g0327700 Oryza sativa ssp. japonica HOM05D003436 ORTHO05D003674 5.1e-11 72.0 174 38.5
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 5.1e-11 72.0 87 51.7
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 8.6e-11 71.2 145 41.4
Actinidia22033 Actinidia chinensis HOM05D003436 ORTHO05D003674 3.3e-10 69.3 157 42.0
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 9.6e-10 67.8 170 43.5
PGR142G0291 Punica granatum HOM05D003436 ORTHO05D003674 9.6e-10 67.8 114 53.5
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.2e-09 67.4 68 55.9
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.2e-09 67.4 182 38.5
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.6e-09 67.0 60 60.0
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.6e-09 67.0 60 60.0
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 1.6e-09 67.0 60 61.7
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.1e-09 66.6 123 43.9
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 2.8e-09 66.2 156 41.0
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.7e-09 65.5 86 54.7
ECA247G3621 Erigeron canadensis HOM05D003436 ORTHO05D003674 8.1e-09 64.7 51 70.6
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 8.1e-09 64.7 97 50.5
Sopen03g011930 Solanum pennellii HOM05D003436 ORTHO05D003674 1.4e-08 63.9 169 37.3
Solyc03g058330.3 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.8e-08 63.5 169 37.3
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 2.4e-08 63.2 80 53.8
Phvul.007G259400 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.1e-08 62.8 160 36.9
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 4.0e-08 62.4 88 51.1
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 5.2e-08 62.0 80 48.8
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 5.2e-08 62.0 87 46.0
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.2e-08 62.0 82 52.4
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 8.9e-08 61.2 68 51.5
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 8.9e-08 61.2 68 51.5
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.2e-07 60.8 82 52.4
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 1.5e-07 60.5 69 52.2
Zm00001eb308610 Zea mays HOM05D003436 ORTHO05D003674 1.5e-07 60.5 144 39.6
Actinidia32390 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.6e-07 59.7 121 42.1
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.4e-07 59.3 60 56.7
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 4.4e-07 58.9 86 45.3
Oeu007767.1 Olea europaea HOM05D003436 ORTHO05D003674 5.8e-07 58.5 68 55.9
Manes.09G034800 Manihot esculenta HOM05D003436 ORTHO05D003674 7.6e-07 58.2 44 70.5
Atru.chr8.1104 Acer truncatum HOM05D003436 ORTHO05D003674 9.9e-07 57.8 119 45.4
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 9.9e-07 57.8 74 51.4
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 9.9e-07 57.8 175 39.4
BolC3t12872H Brassica oleracea HOM05D003436 ORTHO05D003674 1.3e-06 57.4 102 47.1
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 1.7e-06 57.0 88 45.5
Ah.13g075920 Amaranthus hybridus HOM05D003436 ORTHO05D003674 4.9e-06 55.5 86 46.5


User provided reference genes

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