Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.3e-62 241.9 107 100.0
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.2e-32 141.7 74 82.4
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.4e-32 141.0 74 79.7
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 8.7e-30 133.7 74 78.4
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 8.7e-30 133.7 74 75.7
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.5e-29 132.1 74 75.7
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-25 119.8 73 69.9
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 6.4e-25 117.5 73 67.1
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.9e-24 115.9 74 66.2
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.4e-24 114.4 74 64.9
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 7.1e-24 114.0 74 66.2
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 9.3e-24 113.6 74 64.9
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.3e-24 113.6 74 66.2
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.6e-23 111.3 74 64.9
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.9e-22 108.2 74 63.5
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 5.1e-22 107.8 74 60.8
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.9e-21 105.9 68 64.7
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 2.5e-21 105.5 73 57.5
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 3.7e-20 101.7 68 63.2
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.8e-19 99.4 66 62.1
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.8e-19 99.4 75 61.3
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.4e-19 99.0 70 61.4
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.0e-19 98.2 71 60.6
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.0e-19 98.2 71 60.6
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 4.0e-19 98.2 74 63.5
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-18 96.7 66 60.6
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-18 95.9 65 64.6
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 5.8e-18 94.4 65 63.1
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 5.8e-18 94.4 65 63.1
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 9.9e-18 93.6 67 55.2
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 9.9e-18 93.6 67 55.2
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-17 93.2 65 61.5
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-16 90.1 65 58.5
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 4.2e-16 88.2 72 55.6
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 5.5e-16 87.8 73 53.4
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 5.5e-16 87.8 67 52.2
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.5e-16 87.8 67 52.2
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 7.1e-16 87.4 73 52.1
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-15 86.7 72 55.6
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.6e-15 86.3 73 52.1
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 2.1e-15 85.9 66 59.1
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.6e-15 84.7 66 57.6
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.6e-15 84.7 66 57.6
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 4.6e-15 84.7 69 53.6
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 7.9e-15 84.0 69 53.6
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.3e-14 83.2 68 50.0
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-14 82.8 73 53.4
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-14 82.8 73 53.4
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.3e-14 82.4 74 52.7
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.3e-14 82.4 68 51.5
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 5.1e-14 81.3 68 50.0
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.7e-14 80.9 68 48.5
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 8.7e-14 80.5 68 50.0
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 8.7e-14 80.5 65 55.4
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 8.7e-14 80.5 65 55.4
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.5e-13 79.7 65 55.4
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.3e-12 76.6 67 47.8
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 4.8e-12 74.7 64 57.8
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.2e-12 74.3 68 47.1
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 8.2e-12 73.9 66 54.5
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.2e-12 73.9 68 51.5
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.8e-11 72.8 58 58.6
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 4.0e-11 71.6 66 51.5
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.3e-11 71.2 88 43.2
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.3e-11 71.2 73 46.6
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.2e-10 70.1 70 48.6
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.2e-10 70.1 74 47.3
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-10 69.7 71 46.5
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.6e-10 68.9 74 44.6
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.4e-10 68.6 59 47.5
ClCG03G010090 Citrullus lanatus HOM05D004865 ORTHO05D005949 7.6e-10 67.4 48 58.3
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.0e-09 67.0 69 44.9
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-09 67.0 69 44.9
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-09 67.0 62 43.5
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.7e-09 66.2 66 48.5
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 1.7e-09 66.2 59 52.5
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.8e-09 65.1 74 44.6
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-09 64.3 61 45.9
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-08 63.5 73 42.5
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-08 63.5 73 42.5
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-08 63.5 64 43.8
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.5e-08 62.4 78 46.2
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 2.5e-08 62.4 74 45.9
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.2e-08 62.0 71 42.3
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 4.2e-08 61.6 65 46.2
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 4.2e-08 61.6 73 42.5
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-08 61.2 61 47.5
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.1e-08 60.8 64 40.6
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.1e-08 60.8 73 43.8
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 9.3e-08 60.5 63 46.0
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-07 60.1 60 45.0
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-07 60.1 61 44.3
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-07 59.7 73 42.5
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 1.6e-07 59.7 73 42.5
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.7e-07 58.9 54 48.1
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.7e-07 58.9 75 42.7
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.7e-07 58.9 72 44.4
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 2.7e-07 58.9 52 51.9
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 2.7e-07 58.9 52 51.9
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-07 58.9 63 42.9
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.6e-07 58.2 62 43.5
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-07 57.4 62 45.2
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-06 57.0 62 40.3
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.3e-06 56.6 68 44.1
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 1.8e-06 56.2 59 44.1
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 1.8e-06 56.2 61 42.6
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.0e-06 55.5 65 38.5
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.0e-06 55.5 65 38.5
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.0e-06 55.5 65 38.5
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.0e-06 55.5 61 41.0
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.0e-06 55.5 61 41.0
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 3.0e-06 55.5 60 43.3
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.7e-06 54.3 56 42.9


User provided reference genes

Program Settings