Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 4.9e-161 571.2 321 100.0
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.9e-145 518.8 321 87.5
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 4.8e-116 421.8 332 73.2
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 3.1e-75 286.2 337 54.9
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 9.1e-75 284.6 335 58.2
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.0e-73 281.2 349 53.3
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 4.2e-72 275.8 351 49.3
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 7.2e-72 275.0 336 54.8
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 1.0e-70 271.2 346 50.9
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.8e-70 268.5 346 50.6
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.8e-70 268.1 340 50.3
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.2e-69 267.7 333 53.5
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.2e-69 267.7 341 50.4
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.0e-69 266.9 336 53.3
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 3.7e-68 262.7 309 57.3
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.8e-67 260.4 334 56.9
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.4e-67 260.0 311 49.8
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.0e-66 256.9 334 50.6
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 7.7e-66 255.0 368 50.8
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.3e-65 254.2 340 55.3
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.6e-65 251.9 345 51.0
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 8.6e-65 251.5 355 53.5
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.1e-64 251.1 345 49.3
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.5e-64 250.8 346 48.8
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.5e-64 250.8 337 52.8
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.9e-64 250.4 346 50.3
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.3e-64 249.6 345 46.4
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 4.2e-64 249.2 365 48.8
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.6e-63 247.3 340 52.9
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.6e-63 247.3 256 51.6
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.8e-63 246.5 328 49.1
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.6e-63 246.1 338 52.7
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 6.1e-63 245.4 341 48.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.1e-63 245.4 352 52.0
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.0e-63 245.0 338 48.2
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.0e-62 244.6 355 46.2
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 3.0e-62 243.0 367 52.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.0e-62 243.0 337 51.6
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 3.0e-62 243.0 352 49.1
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 8.9e-62 241.5 330 49.1
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.2e-61 241.1 327 52.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 3.4e-61 239.6 260 53.5
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 3.4e-61 239.6 330 53.6
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 7.5e-61 238.4 341 50.1
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 9.8e-61 238.0 376 50.0
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.7e-60 237.3 348 50.0
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 2.2e-60 236.9 349 49.3
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 6.3e-60 235.3 334 48.5
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 8.3e-60 235.0 361 46.8
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.8e-59 233.8 264 52.3
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 9.2e-59 231.5 356 44.4
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.2e-58 231.1 355 48.2
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 2.0e-58 230.3 358 48.9
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 2.7e-58 229.9 345 51.9
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 5.9e-58 228.8 339 52.2
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.3e-57 226.9 331 47.4
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 3.3e-56 223.0 331 48.9
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 4.3e-56 222.6 354 48.0
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.6e-55 220.7 356 47.8
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 3.6e-55 219.5 322 50.6
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 4.7e-55 219.2 316 46.5
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.4e-54 217.6 328 41.8
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 8.9e-54 214.9 325 50.5
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 2.0e-53 213.8 330 49.1
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-53 213.4 323 46.7
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-53 213.4 323 46.7
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 2.6e-53 213.4 323 46.7
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 9.8e-53 211.5 363 45.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.7e-52 210.7 247 47.8
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 3.7e-52 209.5 248 48.0
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 8.3e-52 208.4 261 50.6
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.1e-51 208.0 316 47.5
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 7.0e-51 205.3 260 53.5
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 1.2e-50 204.5 238 50.0
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 3.5e-50 203.0 348 46.6
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 3.5e-50 203.0 247 53.0
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 7.8e-50 201.8 316 50.3
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 3.0e-49 199.9 329 43.2
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 5.0e-49 199.1 353 42.2
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.1e-48 198.0 257 44.0
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.5e-48 197.6 269 48.3
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.5e-48 197.6 339 43.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 9.5e-48 194.9 280 52.1
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 3.6e-47 193.0 223 53.8
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 8.0e-47 191.8 357 44.5
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.1e-46 191.4 330 43.3
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.8e-46 190.7 338 48.2
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.8e-46 190.7 198 60.1
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.1e-46 189.9 342 48.2
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.0e-46 189.5 348 47.4
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 6.8e-46 188.7 351 46.4
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 6.8e-46 188.7 326 42.0
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-45 188.0 356 44.9
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.6e-45 186.8 344 45.6
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 4.4e-45 186.0 215 52.1
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.3e-44 184.5 244 49.6
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.7e-44 184.1 315 41.9
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.2e-44 183.7 343 46.6
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 3.7e-44 183.0 307 50.8
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 4.9e-44 182.6 334 41.6
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.9e-44 182.6 206 54.4
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 8.3e-44 181.8 319 38.9
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 8.3e-44 181.8 327 44.3
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.4e-43 181.0 242 50.4
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.4e-43 181.0 164 57.3
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-43 180.6 335 40.6
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.1e-43 179.5 343 42.9
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 7.1e-43 178.7 333 40.2
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.2e-42 177.9 215 49.3
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-42 177.9 333 40.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.2e-42 177.9 328 41.5
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.6e-42 177.6 329 40.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.6e-42 177.6 333 40.2
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.7e-42 176.8 328 46.0
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.3e-41 174.5 352 45.7
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.7e-41 174.1 309 39.2
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.7e-41 174.1 260 45.4
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 2.3e-41 173.7 333 36.9
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.9e-41 172.9 234 49.6
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 3.3e-40 169.9 329 45.3
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 4.3e-40 169.5 334 36.8
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 9.5e-40 168.3 149 67.1
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 6.2e-39 165.6 205 48.3
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-38 164.5 325 41.2
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.4e-38 164.5 344 42.2
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.1e-38 163.3 316 40.5
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 8.9e-38 161.8 325 41.5
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.2e-37 161.4 330 42.4
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.6e-37 160.2 334 43.7
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.4e-37 159.5 201 52.2
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-35 154.8 344 41.3
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.1e-35 154.8 265 38.1
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 2.4e-35 153.7 263 41.8
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 3.2e-35 153.3 325 40.3
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 3.2e-35 153.3 325 40.3
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 3.2e-35 153.3 325 40.3
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 5.4e-35 152.5 266 44.0
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 7.1e-35 152.1 344 42.4
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 7.1e-35 152.1 344 42.4
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 7.1e-35 152.1 344 42.4
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 9.2e-35 151.8 246 45.1
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 6.0e-34 149.1 331 39.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 3.0e-33 146.7 252 42.1
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 1.2e-31 141.4 248 40.7
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.1e-31 140.6 272 37.9
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 4.7e-31 139.4 329 38.3
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.4e-30 137.9 228 43.0
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.2e-29 134.8 323 33.1
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 9.9e-29 131.7 194 40.7
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 9.9e-29 131.7 296 35.8
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 8.4e-28 128.6 309 34.6
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 1.4e-27 127.9 318 34.9
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-27 127.5 318 34.3
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 2.1e-26 124.0 399 29.6
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 3.5e-26 123.2 409 28.4
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 1.0e-25 121.7 281 35.6
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 1.5e-24 117.9 277 32.5
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 8.1e-23 112.1 318 33.3
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.4e-22 111.3 243 40.7
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 8.4e-20 102.1 336 32.7
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-19 100.9 318 31.8
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.9e-19 100.9 323 30.7
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 7.1e-19 99.0 190 39.5
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.3e-17 94.0 175 37.7
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 2.1e-15 87.4 105 50.5
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 2.6e-13 80.5 159 36.5
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.3e-12 78.2 73 57.5
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.7e-10 70.5 246 32.9
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 7.9e-10 68.9 165 33.3
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 7.9e-10 68.9 286 30.8
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 1.0e-09 68.6 187 29.4
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.5e-08 63.9 226 24.3
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.3e-07 61.6 332 22.9
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-07 61.2 289 26.3
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.8e-07 59.7 324 23.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.2e-07 59.3 296 22.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 5.3e-06 56.2 306 23.2
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 5.3e-06 56.2 316 23.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 6.9e-06 55.8 270 25.2


User provided reference genes

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