Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.0e-109 399.1 190 100.0
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 1.8e-94 349.4 195 86.7
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 2.2e-92 342.4 180 88.9
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.6e-82 309.7 179 78.8
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.6e-82 309.7 179 79.9
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 3.5e-82 308.5 180 80.6
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 6.0e-82 307.8 180 78.9
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 7.8e-82 307.4 176 78.4
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 7.8e-82 307.4 180 80.0
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 6.6e-81 304.3 180 78.3
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.1e-80 303.5 180 77.2
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 1.5e-80 303.1 176 77.3
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 3.3e-80 302.0 180 76.7
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 4.3e-80 301.6 176 80.1
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 4.3e-80 301.6 180 78.3
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 4.3e-80 301.6 180 76.7
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 5.6e-80 301.2 180 75.0
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 7.3e-80 300.8 176 77.8
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 7.3e-80 300.8 180 75.6
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.8e-79 298.9 176 76.1
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.8e-79 298.9 176 76.1
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 3.6e-79 298.5 180 76.7
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 6.2e-79 297.7 180 75.0
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 6.2e-79 297.7 178 76.4
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 6.2e-79 297.7 180 74.4
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.3e-78 295.8 180 75.0
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.3e-78 295.8 180 75.0
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 3.1e-78 295.4 176 75.0
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 4.0e-78 295.0 180 73.9
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 5.2e-78 294.7 180 75.0
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 8.9e-78 293.9 176 75.6
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.6e-77 292.4 178 75.3
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.6e-77 292.4 187 73.3
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 3.4e-77 292.0 180 73.9
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 4.4e-77 291.6 180 71.7
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 5.8e-77 291.2 181 74.0
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 1.7e-76 289.7 180 73.9
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 2.2e-76 289.3 209 68.4
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 2.2e-76 289.3 190 71.6
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 3.7e-76 288.5 182 74.2
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 4.9e-76 288.1 180 73.3
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 8.3e-76 287.3 167 78.4
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 1.4e-75 286.6 180 72.2
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 3.2e-75 285.4 180 72.2
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 4.1e-75 285.0 178 74.2
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 4.1e-75 285.0 180 71.1
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 5.4e-75 284.6 180 74.4
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 9.2e-75 283.9 174 72.4
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 1.2e-74 283.5 174 73.6
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 2.1e-74 282.7 180 70.6
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 2.7e-74 282.3 180 70.0
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 6.0e-74 281.2 180 72.8
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 7.8e-74 280.8 174 73.0
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 7.8e-74 280.8 174 73.0
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 7.8e-74 280.8 174 73.0
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 1.7e-73 279.6 177 70.6
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 3.9e-73 278.5 174 72.4
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 3.9e-73 278.5 180 71.1
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 5.1e-73 278.1 180 68.9
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 6.6e-73 277.7 174 71.8
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 8.6e-73 277.3 185 70.3
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.1e-72 276.9 174 71.8
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.5e-72 276.6 185 68.6
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 1.5e-72 276.6 213 63.8
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.9e-72 276.2 180 68.3
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 4.3e-72 275.0 174 70.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 7.3e-72 274.2 180 68.3
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 1.2e-71 273.5 213 66.2
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.2e-71 273.5 178 71.3
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.1e-71 272.7 181 69.1
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 3.6e-71 271.9 174 71.3
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 6.2e-71 271.2 174 71.8
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 3.1e-70 268.9 180 66.7
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 8.9e-70 267.3 179 68.2
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.2e-69 266.9 174 69.0
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 1.2e-69 266.9 192 64.6
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 1.5e-69 266.5 174 68.4
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 2.0e-69 266.2 174 66.7
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 2.0e-69 266.2 174 70.7
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 6.4e-68 261.2 206 60.7
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 8.4e-68 260.8 174 70.1
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 5.4e-67 258.1 176 67.6
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 2.7e-66 255.8 181 64.1
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 7.8e-66 254.2 181 63.5
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.8e-62 243.0 163 69.3
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.5e-61 240.0 151 72.2
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 2.6e-61 239.2 151 72.8
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 6.0e-58 228.0 157 67.5
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 7.8e-58 227.6 176 61.9
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.1e-55 217.6 158 69.6
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 3.1e-54 215.7 136 75.7
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 1.7e-52 209.9 189 53.4
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 3.0e-49 199.1 174 56.3
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.1e-46 190.7 175 48.6
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 1.8e-46 189.9 174 47.7
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 9.9e-45 184.1 116 75.9
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 5.1e-41 171.8 109 72.5
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.8e-39 165.2 81 100.0
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.1e-38 164.1 180 48.3
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.4e-38 163.7 81 98.8
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.4e-38 163.7 81 98.8
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.6e-37 157.9 81 96.3
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 2.0e-29 133.3 173 39.9
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 1.4e-27 127.1 136 50.0
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.7e-26 122.9 60 93.3
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.3e-25 119.8 60 88.3
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 6.7e-25 118.2 119 50.4
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 8.7e-25 117.9 81 70.4
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 5.5e-19 98.6 65 70.8
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.6e-18 95.9 52 96.2
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 6.1e-18 95.1 56 76.8
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 2.0e-16 90.1 74 62.2
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 7.7e-13 78.2 119 36.1
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 1.9e-11 73.6 45 66.7
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.1e-06 57.8 61 39.3
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 4.1e-06 55.8 52 44.2


User provided reference genes

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