Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.1e-184 649.8 323 100.0
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 4.6e-183 644.4 323 99.1
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 8.9e-163 577.0 320 87.5
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.4e-147 525.8 340 80.9
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.8e-139 499.6 326 75.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.0e-137 493.8 329 74.2
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.2e-136 488.8 330 73.0
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 9.3e-136 487.3 327 74.0
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.6e-135 486.5 330 72.4
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.6e-135 486.5 330 72.4
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 6.7e-134 481.1 329 72.9
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 3.3e-133 478.8 323 73.7
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 5.7e-133 478.0 327 73.7
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 2.1e-132 476.1 325 72.0
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 2.4e-131 472.6 329 71.1
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 5.3e-131 471.5 328 72.0
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.5e-130 469.9 328 71.6
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.6e-130 469.2 329 71.1
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.3e-129 466.8 328 71.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.1e-128 463.8 323 71.5
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.4e-128 463.4 340 71.2
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.5e-128 462.6 323 72.8
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.5e-128 461.5 323 70.9
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 7.2e-128 461.1 335 70.1
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 9.3e-128 460.7 323 71.2
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.2e-127 460.3 341 70.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 6.1e-127 458.0 335 69.6
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 6.7e-126 454.5 326 70.6
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 3.3e-125 452.2 336 68.5
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 3.3e-125 452.2 336 69.9
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.3e-125 451.8 349 67.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.1e-123 447.2 340 67.4
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.4e-123 446.8 338 67.5
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.5e-122 443.4 326 68.4
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 2.0e-122 443.0 326 68.7
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 4.5e-122 441.8 334 68.6
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.7e-121 439.9 332 67.8
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.7e-121 439.9 385 62.1
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.2e-121 439.5 331 67.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 5.0e-121 438.3 329 66.9
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 6.5e-121 438.0 325 66.5
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.5e-121 437.6 323 67.8
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 3.2e-120 435.6 345 64.6
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 4.2e-120 435.3 324 69.1
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 7.2e-120 434.5 326 66.9
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.1e-119 433.0 343 63.8
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 4.6e-119 431.8 325 67.4
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.0e-118 430.6 270 77.4
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.0e-118 430.6 328 64.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.0e-118 429.1 330 66.1
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 5.1e-118 428.3 337 65.6
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 5.1e-118 428.3 390 60.0
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.0e-117 426.4 357 62.7
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 7.4e-117 424.5 384 60.9
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 2.8e-116 422.5 329 65.0
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 8.2e-116 421.0 331 65.6
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 6.9e-115 417.9 374 60.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.9e-115 417.9 323 65.3
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.0e-114 416.4 331 65.3
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 3.4e-114 415.6 332 65.7
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.0e-113 414.1 333 62.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 2.2e-113 412.9 383 60.3
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.9e-112 409.8 266 72.9
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.9e-112 409.8 385 58.2
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.5e-112 409.5 283 70.0
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.5e-112 408.3 328 64.6
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 5.5e-112 408.3 334 63.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 3.6e-111 405.6 362 58.8
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.6e-111 405.6 388 55.7
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.0e-110 404.1 283 68.9
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.3e-110 402.9 299 69.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 5.7e-109 398.3 254 75.2
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 9.7e-109 397.5 338 60.1
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 9.7e-109 397.5 347 59.7
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 1.7e-108 396.7 328 63.7
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.2e-108 396.4 381 57.0
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.1e-107 394.0 354 59.0
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.1e-107 394.0 274 72.3
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 4.1e-107 392.1 338 60.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.5e-106 388.7 389 54.5
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 8.5e-105 384.4 348 62.1
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.4e-102 377.1 336 58.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 6.7e-102 374.8 326 59.8
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.5e-101 373.6 272 66.5
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.7e-101 371.7 242 72.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.1e-99 365.9 324 58.3
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 4.1e-99 365.5 342 54.7
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 5.3e-99 365.2 214 78.0
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 9.1e-99 364.4 207 79.7
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.7e-98 362.8 324 58.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.3e-97 360.5 324 57.7
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 3.8e-97 359.0 329 56.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 5.0e-97 358.6 294 62.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 6.5e-97 358.2 323 56.3
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 8.5e-97 357.8 224 75.0
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.1e-95 351.7 376 52.4
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 3.0e-94 349.4 319 58.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 7.5e-93 344.7 323 54.8
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.7e-92 343.6 313 58.8
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.8e-92 342.0 341 54.5
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 2.3e-89 333.2 323 52.9
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 2.3e-89 333.2 323 52.9
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.5e-88 330.5 323 52.6
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.9e-88 330.1 309 55.0
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.3e-86 323.2 386 47.9
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 4.0e-86 322.4 326 51.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-84 316.6 325 50.8
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 2.2e-84 316.6 332 51.5
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 4.9e-84 315.5 330 51.5
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 3.1e-83 312.8 323 50.8
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-82 310.8 323 50.8
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 4.5e-82 308.9 323 50.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.3e-80 302.4 266 58.6
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 7.3e-80 301.6 248 65.3
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 9.5e-80 301.2 327 48.9
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.7e-73 280.4 174 76.4
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.4e-70 270.8 264 51.5
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.5e-69 267.3 159 75.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 8.3e-68 261.5 168 71.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.2e-67 259.6 249 55.0
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.4e-59 233.4 221 51.1
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.0e-57 226.5 153 69.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 1.6e-55 220.7 368 37.8
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.7e-55 219.2 150 71.3
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.5e-48 196.8 186 60.2
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.9e-44 183.3 114 74.6
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.2e-39 165.6 119 65.5
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 8.4e-36 155.2 317 35.3
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.4e-32 142.1 100 69.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.8e-30 137.5 80 78.8
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 5.8e-29 132.5 100 64.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 8.4e-28 128.6 120 64.2
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.3e-24 116.3 120 55.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 8.4e-20 102.1 52 75.0
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 8.7e-17 92.0 97 54.6
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 4.3e-16 89.7 62 66.1
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.0e-14 82.0 109 47.7
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.9e-13 79.3 48 68.8
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 6.5e-12 75.9 55 70.9


User provided reference genes

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