Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 2.2e-241 838.6 425 100.0
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 4.5e-239 830.9 425 99.3
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.8e-235 818.9 425 97.4
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 3.6e-228 794.7 426 94.1
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.4e-227 792.7 426 94.1
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 3.0e-198 695.3 425 82.4
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 5.1e-198 694.5 425 81.6
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 8.6e-198 693.7 425 81.4
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 8.6e-198 693.7 425 82.4
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.1e-197 693.3 426 81.5
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 3.3e-197 691.8 427 82.4
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 7.3e-197 690.6 392 87.0
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 9.5e-197 690.3 428 80.8
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.6e-196 688.3 427 82.9
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.7e-196 688.0 428 80.4
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 6.2e-196 687.6 425 81.4
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 8.1e-196 687.2 426 80.8
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.1e-195 686.8 427 82.7
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 1.8e-195 686.0 426 81.2
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 2.4e-195 685.6 428 80.8
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 6.8e-195 684.1 426 82.4
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 8.9e-195 683.7 425 80.5
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 8.9e-195 683.7 428 80.4
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.2e-194 683.3 425 80.9
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-194 682.9 428 79.9
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 7.6e-194 680.6 389 86.6
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 2.9e-193 678.7 425 79.8
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 2.9e-193 678.7 425 80.2
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.8e-193 678.3 429 78.6
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.1e-192 676.8 425 80.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.9e-192 676.0 425 79.8
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 2.4e-192 675.6 394 84.3
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 5.4e-192 674.5 428 79.7
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 9.2e-192 673.7 425 80.5
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.2e-191 673.3 425 79.8
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 4.6e-191 671.4 429 79.5
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 6.0e-191 671.0 395 84.1
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.0e-190 670.2 427 79.4
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.3e-190 669.1 427 79.2
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.9e-190 668.3 427 79.4
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.3e-189 665.2 425 79.5
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.3e-189 665.2 426 79.3
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.6e-188 661.8 427 79.6
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 4.7e-188 661.4 425 79.1
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 6.2e-188 661.0 422 78.4
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 8.1e-188 660.6 392 83.4
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.1e-187 660.2 425 79.1
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 5.2e-187 657.9 392 83.2
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.5e-186 656.4 422 78.0
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.4e-186 655.2 425 79.5
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.4e-186 654.8 425 77.4
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 7.6e-186 654.1 428 78.3
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.3e-185 653.3 427 77.3
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.7e-185 652.9 380 85.0
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.7e-185 652.9 426 77.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.8e-185 651.7 409 79.7
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 4.9e-185 651.4 392 81.4
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-184 650.2 396 81.8
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.4e-184 649.8 429 76.0
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.4e-184 649.8 426 77.2
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 4.2e-184 648.3 427 76.8
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 2.1e-183 646.0 432 75.5
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.3e-182 643.3 432 75.9
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 2.3e-182 642.5 425 76.0
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 3.0e-182 642.1 429 75.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.0e-182 642.1 426 77.0
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.9e-182 641.7 396 81.3
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 5.1e-182 641.3 425 76.0
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 5.1e-182 641.3 432 75.7
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 6.6e-182 641.0 425 76.0
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 1.5e-181 639.8 425 76.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.9e-181 639.4 425 76.2
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.9e-181 639.4 432 75.2
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.5e-181 639.0 425 76.0
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 5.6e-181 637.9 425 76.0
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.6e-181 637.9 434 75.1
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 7.3e-181 637.5 427 76.1
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.3e-181 637.5 410 78.8
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 1.3e-180 636.7 425 76.0
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.1e-180 636.0 408 78.4
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 2.8e-180 635.6 425 75.1
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.6e-180 635.2 425 75.8
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.6e-180 635.2 425 75.8
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.6e-180 635.2 425 75.8
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 6.2e-180 634.4 427 75.6
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 1.4e-179 633.3 427 75.4
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 1.4e-179 633.3 427 75.4
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.8e-179 632.9 425 76.0
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 4.0e-179 631.7 429 75.1
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 4.0e-179 631.7 427 75.6
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 4.0e-179 631.7 429 75.1
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 5.3e-179 631.3 425 75.3
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.2e-178 630.2 425 75.3
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.2e-178 630.2 405 78.5
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.0e-178 629.4 425 76.2
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.6e-178 629.0 425 74.8
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 6.4e-177 624.4 426 76.3
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 6.4e-177 624.4 427 74.7
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.4e-176 623.2 405 77.5
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 1.9e-176 622.9 426 74.6
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 4.2e-176 621.7 427 74.7
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 7.1e-176 620.9 431 74.5
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 7.1e-176 620.9 378 81.2
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 7.1e-176 620.9 390 82.1
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 2.1e-175 619.4 410 77.6
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 3.5e-175 618.6 392 78.3
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 4.6e-175 618.2 425 73.6
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 1.0e-174 617.1 376 80.6
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 1.0e-174 617.1 376 80.6
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.0e-174 617.1 384 79.2
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 3.9e-174 615.1 425 73.9
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.1e-173 613.6 430 73.0
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.1e-172 609.4 384 79.9
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.0e-171 604.0 431 71.7
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.2e-170 603.6 431 72.2
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.0e-170 602.8 413 74.6
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 2.6e-170 602.4 392 76.8
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 9.9e-170 600.5 473 67.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.8e-169 598.6 430 72.3
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 4.9e-169 598.2 425 72.5
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 7.1e-168 594.3 427 70.5
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.1e-167 592.8 406 73.2
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 4.6e-167 591.7 354 81.6
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.3e-166 590.1 415 74.9
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.3e-164 583.6 455 68.8
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 8.2e-164 580.9 335 84.5
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 5.3e-163 578.2 411 70.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 9.0e-163 577.4 425 71.1
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.1e-160 570.5 379 75.7
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.7e-159 565.8 438 69.2
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 4.8e-156 555.1 374 72.2
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 3.4e-154 548.9 322 83.2
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.1e-152 543.9 425 64.5
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 9.4e-152 540.8 393 67.9
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.6e-151 540.0 320 83.4
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 3.3e-149 532.3 373 74.8
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 7.4e-149 531.2 444 64.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 6.3e-148 528.1 412 68.4
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.1e-147 525.8 395 67.1
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.1e-143 513.1 367 71.1
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 4.7e-143 511.9 435 63.2
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 7.9e-143 511.1 443 64.6
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 2.6e-138 496.1 399 67.7
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 6.5e-137 491.5 402 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.8e-134 483.4 428 61.2
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.9e-134 482.3 332 75.6
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 3.3e-133 479.2 415 60.7
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.1e-123 447.6 361 65.9
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.8e-118 430.3 241 87.1
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.3e-113 413.3 335 64.8
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 5.0e-113 412.1 271 74.9
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 7.8e-106 388.3 231 81.4
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.2e-103 380.9 211 90.5
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.0e-97 359.0 407 50.4
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 5.6e-96 355.5 390 49.5
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 7.3e-88 328.6 275 60.7
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.8e-86 323.9 391 48.6
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.0e-81 306.6 196 75.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 3.9e-81 306.2 352 53.4
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 2.0e-69 267.3 151 84.1
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.2e-66 258.1 221 61.5
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 3.9e-65 253.1 302 48.0
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 2.1e-63 247.3 308 44.8
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 9.9e-61 238.4 214 60.7
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.1e-57 226.1 426 39.9
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 6.7e-57 225.7 304 42.1
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.2e-52 210.7 120 80.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 8.4e-52 208.8 183 60.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.6e-37 160.6 132 64.4
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.4e-30 138.3 88 79.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 2.0e-29 134.4 75 88.0
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.7e-26 123.2 69 85.5
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.5e-21 106.7 75 66.7
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 5.0e-20 103.2 61 78.7
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 2.1e-18 97.8 121 48.8
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.4e-17 95.1 107 47.7
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 5.2e-17 93.2 54 79.6
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 9.7e-16 89.0 95 53.7
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 6.3e-15 86.3 171 39.8
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 5.3e-14 83.2 123 43.9
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 2.6e-13 80.9 60 65.0
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 9.7e-08 62.4 55 60.0
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 4.1e-06 57.0 35 71.4
TPR.G39825 Trifolium pratense HOM05D003740 ORTHO05D411371 5.3e-06 56.6 33 75.8


User provided reference genes

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