Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 1.9e-172 609.0 286 100.0
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 8.2e-168 593.6 286 97.2
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 2.8e-160 568.5 286 92.0
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 7.4e-153 543.9 284 87.3
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 1.4e-151 539.7 284 86.3
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 1.9e-148 529.3 284 85.2
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 2.5e-148 528.9 286 87.8
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 5.5e-148 527.7 284 84.5
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 1.2e-147 526.6 284 85.2
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.1e-147 525.8 284 84.2
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 2.1e-147 525.8 284 83.5
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 2.7e-147 525.4 284 85.6
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 3.6e-147 525.0 284 85.6
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 6.1e-147 524.2 284 84.5
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 6.1e-147 524.2 284 84.9
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 6.1e-147 524.2 284 84.9
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 6.1e-147 524.2 284 84.9
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.0e-146 523.5 284 82.4
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 4.0e-146 521.5 284 83.5
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.2e-146 521.2 284 83.8
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 6.7e-146 520.8 288 83.0
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 6.7e-146 520.8 284 82.4
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 2.0e-145 519.2 281 84.0
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 5.7e-145 517.7 284 82.4
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 7.5e-145 517.3 284 83.8
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 9.7e-145 516.9 284 84.2
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 9.7e-145 516.9 284 84.2
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.3e-144 516.5 283 84.1
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 82.0
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 83.1
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 83.1
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 2.2e-144 515.8 287 82.2
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.8e-144 515.4 284 83.1
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.8e-144 515.4 284 82.4
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 81.7
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 81.0
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 8.2e-144 513.8 283 81.6
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 1.1e-143 513.5 284 83.8
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.8e-143 512.7 286 80.4
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 1.8e-143 512.7 284 82.0
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 2.4e-143 512.3 281 82.9
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 3.1e-143 511.9 282 83.7
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 3.1e-143 511.9 284 82.0
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 3.1e-143 511.9 284 81.0
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 4.1e-143 511.5 283 83.4
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 1.2e-142 510.0 287 82.9
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 2.0e-142 509.2 292 80.8
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.6e-142 508.8 284 82.0
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 3.5e-142 508.4 288 81.6
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 4.5e-142 508.1 285 81.1
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 7.7e-142 507.3 283 81.6
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 7.7e-142 507.3 286 81.1
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.2e-141 505.8 285 80.0
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.2e-141 505.8 284 80.6
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 2.9e-141 505.4 284 81.0
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 5.0e-141 504.6 286 81.1
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 6.5e-141 504.2 284 79.9
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 1.9e-140 502.7 281 80.4
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.9e-140 502.7 287 79.8
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 3.2e-140 501.9 284 78.2
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 4.2e-140 501.5 284 79.2
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 1.6e-139 499.6 285 81.4
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 1.6e-139 499.6 283 79.5
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.7e-139 498.8 285 80.4
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 2.7e-139 498.8 284 79.6
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 3.6e-139 498.4 301 77.1
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 3.6e-139 498.4 283 78.8
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 4.7e-139 498.0 284 79.9
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.4e-138 496.5 272 81.6
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.4e-138 496.5 284 77.5
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.8e-138 496.1 280 81.4
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 3.0e-138 495.4 284 79.6
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 3.0e-138 495.4 287 78.4
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 2.0e-137 492.7 281 80.8
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.0e-137 492.7 280 80.4
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 3.4e-137 491.9 284 79.2
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 4.4e-137 491.5 279 81.7
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 7.5e-137 490.7 284 79.9
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.3e-136 490.0 280 80.4
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 2.8e-136 488.8 284 78.2
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 4.8e-136 488.0 284 79.9
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 4.8e-136 488.0 279 80.3
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 6.3e-136 487.6 279 80.3
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 6.3e-136 487.6 279 80.3
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 1.1e-135 486.9 279 80.3
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 1.1e-135 486.9 284 79.6
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 2.4e-135 485.7 279 80.3
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 3.1e-135 485.3 279 80.3
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 5.4e-135 484.6 279 80.3
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 9.1e-135 483.8 279 80.3
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.2e-134 483.4 283 78.1
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 1.2e-134 483.4 279 79.9
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 5.9e-134 481.1 280 81.4
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 5.9e-134 481.1 280 81.4
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 1.3e-133 479.9 281 76.2
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 1.7e-133 479.6 280 81.1
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 2.9e-133 478.8 280 80.7
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.8e-133 478.4 282 79.4
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 5.0e-133 478.0 285 77.5
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 6.5e-133 477.6 270 80.4
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.1e-132 476.9 278 78.8
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.9e-132 476.1 280 76.8
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.5e-132 475.7 284 76.8
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 2.7e-131 472.2 297 74.4
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 4.7e-131 471.5 278 76.6
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.5e-129 466.5 328 67.7
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 4.4e-129 464.9 275 77.1
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 2.0e-126 456.1 277 74.4
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 3.5e-126 455.3 246 84.6
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 2.6e-121 439.1 286 75.2
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 7.5e-121 437.6 274 74.5
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.3e-120 436.8 235 85.5
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 5.6e-116 421.4 233 81.5
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 6.2e-115 417.9 279 67.7
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.9e-108 396.4 225 81.3
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 1.8e-106 389.8 278 65.1
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 1.2e-105 387.1 279 63.8
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 4.4e-105 385.2 281 66.5
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 3.9e-101 372.1 196 85.7
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 6.2e-99 364.8 219 76.3
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 1.6e-91 340.1 282 57.8
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 6.8e-90 334.7 272 61.4
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 5.4e-87 325.1 288 56.9
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 5.4e-79 298.5 167 83.2
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 1.0e-77 294.3 166 82.5
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 8.1e-75 284.6 314 45.5
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 1.0e-64 251.1 277 46.6
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 2.2e-64 250.0 284 46.8
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 4.2e-63 245.7 282 48.6
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 4.6e-62 242.3 229 53.7
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.2e-49 201.1 114 76.3
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 1.7e-43 180.6 103 74.8
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 3.0e-21 106.7 78 64.1
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 1.1e-15 88.2 78 53.8
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 1.4e-13 81.3 52 75.0
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 3.4e-12 76.6 56 57.1
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 1.6e-06 57.8 46 65.2


User provided reference genes

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