Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 1.6e-124 449.5 234 100.0
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 2.1e-113 412.5 234 91.5
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 3.1e-96 355.5 226 85.4
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 2.6e-87 325.9 246 76.0
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 2.6e-42 176.4 235 47.2
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 1.5e-39 167.2 240 44.2
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 3.8e-38 162.5 239 46.4
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 6.5e-38 161.8 235 46.4
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.5e-37 159.8 195 51.3
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 1.0e-35 154.5 199 48.2
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 5.2e-35 152.1 245 40.0
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 5.2e-35 152.1 199 45.7
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 5.2e-35 152.1 242 41.7
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 8.2e-33 144.8 236 41.9
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 8.2e-33 144.8 200 47.5
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 2.4e-32 143.3 243 39.9
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 2.4e-32 143.3 245 42.4
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 7.0e-32 141.7 243 39.5
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 7.0e-32 141.7 224 41.5
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 9.1e-32 141.4 216 47.2
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 1.2e-31 141.0 250 40.4
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.7e-30 137.1 237 41.4
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 8.5e-30 134.8 242 43.0
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.5e-29 133.3 236 39.0
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 3.2e-29 132.9 232 39.7
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.2e-29 132.5 232 39.7
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 5.5e-29 132.1 201 44.8
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 7.2e-29 131.7 233 41.6
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.2e-28 131.0 236 37.7
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.1e-28 130.2 241 39.4
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 6.1e-28 128.6 206 41.7
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 6.1e-28 128.6 199 41.7
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 1.4e-27 127.5 198 41.4
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 1.8e-27 127.1 235 41.3
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.3e-27 126.7 242 39.3
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.2e-27 125.6 242 38.8
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 8.8e-27 124.8 200 46.0
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 8.8e-27 124.8 200 46.0
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 8.8e-27 124.8 242 38.8
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 8.8e-27 124.8 200 42.5
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 3.3e-26 122.9 210 41.9
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 7.5e-26 121.7 253 39.5
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.3e-25 120.9 251 39.4
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 4.8e-25 119.0 198 40.4
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 5.3e-24 115.5 233 39.1
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.0e-22 111.3 195 42.6
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 3.8e-22 109.4 228 37.3
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 8.5e-22 108.2 219 39.3
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.1e-21 107.8 201 40.3
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 2.5e-21 106.7 201 38.8
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 2.5e-21 106.7 202 39.6
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 4.2e-21 105.9 207 37.2
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 3.6e-20 102.8 202 37.1
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 3.6e-20 102.8 202 37.1
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 8.0e-20 101.7 201 37.8
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 8.0e-20 101.7 185 41.6
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.0e-19 101.3 218 39.9
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 5.2e-19 99.0 189 37.6
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 8.8e-19 98.2 218 39.4
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.2e-18 97.8 203 36.9
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 2.0e-18 97.1 204 38.2
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 2.0e-18 97.1 206 40.3
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 4.4e-18 95.9 204 37.7
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 5.7e-18 95.5 220 35.5
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 9.8e-18 94.7 202 37.6
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.2e-17 93.6 201 37.8
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 2.2e-17 93.6 243 32.1
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 2.8e-17 93.2 203 36.0
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 1.1e-16 91.3 201 37.8
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 1.4e-16 90.9 201 37.8
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 2.4e-16 90.1 252 31.0
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.7e-15 86.7 197 36.5
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 1.3e-14 84.3 198 36.9
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 1.3e-14 84.3 198 35.4
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 2.3e-14 83.6 200 31.5
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.9e-14 83.2 159 36.5
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 2.5e-13 80.1 222 35.6
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 4.2e-13 79.3 166 40.4
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.5e-13 79.0 157 33.1
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.6e-12 76.3 201 30.3
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.1e-12 75.5 105 45.7
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 6.1e-12 75.5 212 32.1
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 2.3e-11 73.6 231 32.5
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.0e-11 73.2 242 31.4
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 5.2e-11 72.4 210 34.8
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 8.8e-11 71.6 108 39.8
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 8.8e-11 71.6 238 30.7
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 3.4e-10 69.7 228 27.2
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 3.4e-10 69.7 130 36.9
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.7e-10 68.9 144 29.9
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 2.2e-09 67.0 140 28.6
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 2.0e-07 60.5 103 39.8
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.7e-06 57.4 137 35.8
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 1.7e-06 57.4 150 33.3
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 2.3e-06 57.0 200 30.5
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 5.0e-06 55.8 140 37.1
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 6.6e-06 55.5 157 33.1
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 6.6e-06 55.5 147 32.7


User provided reference genes

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