Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G026500 Cucumis sativus L. HOM05D008310 ORTHO05D010460 1.3e-50 202.6 94 100.0
Sed0025498 Sechium edule HOM05D008310 ORTHO05D010460 3.1e-31 138.3 97 73.2
MELO3C033446.2 Cucumis melo HOM05D008310 ORTHO05D010460 4.5e-22 107.8 103 58.3
Prupe.6G283600 Prunus persica HOM05D008310 ORTHO05D010460 4.5e-22 107.8 94 57.4
FAN09G2600 Fragaria x ananassa HOM05D008310 ORTHO05D010460 1.3e-21 106.3 94 54.3
FAN09G4723 Fragaria x ananassa HOM05D008310 ORTHO05D010460 1.3e-21 106.3 94 54.3
FAN02G0122 Fragaria x ananassa HOM05D008310 ORTHO05D010460 1.7e-21 105.9 93 53.8
FAN05G0762 Fragaria x ananassa HOM05D008310 ORTHO05D010460 3.8e-21 104.8 93 52.7
FAN05G3091 Fragaria x ananassa HOM05D008310 ORTHO05D010460 3.8e-21 104.8 93 52.7
FvH4_6g10780 Fragaria vesca HOM05D008310 ORTHO05D010460 1.1e-20 103.2 95 51.6
FAN14G2720 Fragaria x ananassa HOM05D008310 ORTHO05D010460 1.1e-20 103.2 95 51.6
RcHm_v2.0_Chr3g0461821 Rosa chinensis HOM05D008310 ORTHO05D010460 3.2e-20 101.7 93 50.5
CiPaw.10G160100 Carya illinoinensis HOM05D008310 ORTHO05D010460 1.6e-19 99.4 94 51.1
Sabra06G0080200 Salix brachista HOM05D008310 ORTHO05D010460 7.9e-19 97.1 93 49.5
Potri.006G103800 Populus trichocarpa HOM05D008310 ORTHO05D010460 3.0e-18 95.1 93 50.5
Gohir.A04G095056 Gossypium hirsutum HOM05D008310 ORTHO05D010460 1.1e-17 93.2 95 47.4
Gohir.D04G135000 Gossypium hirsutum HOM05D008310 ORTHO05D010460 2.5e-17 92.0 95 47.4
Gorai.012G118600 Gossypium raimondii HOM05D008310 ORTHO05D010460 2.5e-17 92.0 95 48.4
TAR623G0221 Trochodendron aralioides HOM05D008310 ORTHO05D010460 3.3e-17 91.7 65 61.5
Cfa017132 Carpinus fangiana HOM05D008310 ORTHO05D010460 9.7e-17 90.1 103 48.5
Dinv08424 Davidia involucrata HOM05D008310 ORTHO05D010460 9.7e-17 90.1 94 47.9
Thecc.05G008400 Theobroma cacao HOM05D008310 ORTHO05D010460 2.2e-16 89.0 92 52.2
TWI74G1202 Tripterygium wilfordii HOM05D008310 ORTHO05D010460 4.8e-16 87.8 99 50.5
Phvul.008G093800 Phaseolus vulgaris HOM05D008310 ORTHO05D010460 6.3e-16 87.4 94 46.8
Ciclev10013501m.g Citrus clementina HOM05D008310 ORTHO05D010460 8.2e-16 87.0 95 49.5
Manes.09G110500 Manihot esculenta HOM05D008310 ORTHO05D010460 1.4e-15 86.3 94 44.7
Eucgr.A00610 Eucalyptus grandis HOM05D008310 ORTHO05D010460 3.1e-15 85.1 93 48.4
Lj3g0016268 Lotus japonicus HOM05D008310 ORTHO05D010460 6.9e-15 84.0 94 44.7
Dinv10267 Davidia involucrata HOM05D008310 ORTHO05D010460 1.5e-14 82.8 99 50.5
ECA247G2349 Erigeron canadensis HOM05D008310 ORTHO05D010460 2.6e-14 82.0 96 46.9
Psat3g124760 Pisum sativum HOM05D008310 ORTHO05D010460 2.6e-14 82.0 81 44.4
Hma1.2p1_0501F.1_g167530 Hydrangea macrophylla HOM05D008310 ORTHO05D010460 5.9e-14 80.9 97 49.5
DCAR_028878 Daucus carota HOM05D008310 ORTHO05D010460 7.7e-14 80.5 96 44.8
TPR.G6627 Trifolium pratense HOM05D008310 ORTHO05D010460 7.7e-14 80.5 94 43.6
arahy.Tifrunner.gnm1.ann1.U260GH Arachis hypogaea HOM05D008310 ORTHO05D010460 2.9e-13 78.6 100 45.0
Glyma.07G155100 Glycine max HOM05D008310 ORTHO05D010460 2.9e-13 78.6 94 44.7
Medtr7g069970 Medicago truncatula HOM05D008310 ORTHO05D010460 3.8e-13 78.2 94 41.5
arahy.Tifrunner.gnm1.ann1.HA647U Arachis hypogaea HOM05D008310 ORTHO05D010460 5.0e-13 77.8 99 45.5
HanXRQChr10g0287151 Helianthus annuus HOM05D008310 ORTHO05D010460 1.1e-12 76.6 84 48.8
Atru.chr8.2319 Acer truncatum HOM05D008310 ORTHO05D010460 1.4e-12 76.3 91 41.8
Aqoxy1G01310 Aquilegia oxysepala HOM05D008310 ORTHO05D010460 2.5e-12 75.5 95 41.1
Lj1g0025992 Lotus japonicus HOM05D008310 ORTHO05D010460 3.2e-12 75.1 94 43.6
Potri.016G124300 Populus trichocarpa HOM05D008310 ORTHO05D010460 3.2e-12 75.1 92 43.5
Actinidia32536 Actinidia chinensis HOM05D008310 ORTHO05D010460 9.4e-12 73.6 85 45.9
Glyma.18G205700 Glycine max HOM05D008310 ORTHO05D010460 1.6e-11 72.8 85 42.4
Actinidia20758 Actinidia chinensis HOM05D008310 ORTHO05D010460 4.6e-11 71.2 82 46.3
arahy.Tifrunner.gnm1.ann1.21T5B8 Arachis hypogaea HOM05D008310 ORTHO05D010460 9.7e-09 63.5 90 43.3
arahy.Tifrunner.gnm1.ann1.MKIS3D Arachis hypogaea HOM05D008310 ORTHO05D010460 2.2e-08 62.4 90 42.2
CDE07G0647 Ceratophyllum demersum HOM05D008310 ORTHO05D010460 2.8e-08 62.0 85 44.7
Solyc09g015430.3 Solanum lycopersicum HOM05D008310 ORTHO05D010460 4.8e-08 61.2 77 46.8
Glyma.01G124400 Glycine max HOM05D008310 ORTHO05D010460 9.1e-07 57.0 94 35.1
Nitab4.5_0004676g0010 Nicotiana tabacum HOM05D008310 ORTHO05D010460 9.1e-07 57.0 75 45.3
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 3.4e-06 55.1 79 40.5


User provided reference genes

Program Settings