Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 2.8e-280 968.0 510 100.0
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 2.5e-276 954.9 510 98.4
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 4.3e-268 927.5 510 94.5
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 6.8e-266 920.2 510 93.9
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.2e-262 909.4 510 92.4
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.2e-262 909.4 510 92.5
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 2.0e-262 908.7 510 91.6
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 4.3e-260 901.0 510 90.8
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.2e-259 899.4 510 90.0
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.8e-258 895.6 510 90.0
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 4.0e-258 894.4 510 89.6
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 5.2e-258 894.0 510 91.0
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 5.2e-258 894.0 511 90.2
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 5.2e-258 894.0 510 91.6
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 6.8e-258 893.6 509 90.6
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.0e-257 892.1 511 89.8
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 3.4e-257 891.3 510 89.6
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 4.4e-257 891.0 510 91.2
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 5.8e-257 890.6 511 89.8
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 9.8e-257 889.8 510 89.4
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.3e-256 889.4 510 90.0
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.7e-256 889.0 511 89.6
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 1.7e-256 889.0 510 90.0
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 4.9e-256 887.5 510 90.6
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 4.9e-256 887.5 510 89.8
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 8.3e-256 886.7 510 89.2
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 1.1e-255 886.3 511 90.0
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 3.2e-255 884.8 510 89.4
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 4.1e-255 884.4 510 89.2
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 5.4e-255 884.0 510 89.4
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 9.2e-255 883.2 510 89.0
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 3.5e-254 881.3 510 88.0
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 3.5e-254 881.3 511 89.0
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.5e-254 881.3 510 89.0
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 88.4
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 6.0e-254 880.6 510 88.8
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-253 879.4 512 89.3
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.3e-253 879.4 510 87.8
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.7e-253 879.0 510 87.6
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 3.9e-253 877.9 510 87.6
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 89.2
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 88.4
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 8.6e-253 876.7 511 88.3
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 8.6e-253 876.7 510 87.8
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.1e-252 876.3 510 87.3
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.1e-252 876.3 510 88.4
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.5e-252 875.9 510 88.2
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 1.5e-252 875.9 510 88.4
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.9e-252 875.5 510 87.5
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 1.9e-252 875.5 510 88.6
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.5e-252 875.2 511 89.4
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 2.5e-252 875.2 510 88.4
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.3e-252 874.8 510 88.2
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 4.3e-252 874.4 510 88.4
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 4.3e-252 874.4 510 88.4
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 5.6e-252 874.0 510 86.9
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 5.6e-252 874.0 510 89.0
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 9.5e-252 873.2 510 87.3
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 87.3
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.6e-251 872.5 510 89.4
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.1e-251 872.1 511 87.5
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 86.7
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 4.7e-251 870.9 511 88.1
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 6.2e-251 870.5 510 86.9
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 88.8
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.4e-250 869.4 510 87.6
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 1.4e-250 869.4 510 87.6
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 1.8e-250 869.0 527 87.3
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 1.8e-250 869.0 511 87.7
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 8.9e-250 866.7 510 87.1
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 2.0e-249 865.5 510 86.3
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 2.0e-249 865.5 510 86.3
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 2.6e-249 865.1 510 86.3
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.6e-249 865.1 510 87.6
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 3.4e-249 864.8 510 87.6
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.4e-249 864.8 510 87.5
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 3.4e-249 864.8 510 88.2
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 4.4e-249 864.4 510 88.0
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 5.8e-249 864.0 510 86.1
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 7.6e-249 863.6 510 88.0
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 3.8e-248 861.3 549 83.1
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 1.9e-247 859.0 510 86.7
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 4.6e-246 854.4 494 89.3
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.0e-245 853.2 510 86.3
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 1.3e-245 852.8 510 85.5
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.7e-245 852.4 510 86.1
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 1.5e-244 849.4 510 85.7
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.5e-244 849.4 510 85.7
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.5e-244 849.4 510 85.7
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.9e-244 849.0 510 85.3
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.3e-244 847.8 510 85.7
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 7.3e-244 847.0 512 87.1
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.1e-243 845.5 510 85.3
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 2.1e-243 845.5 511 85.5
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 6.2e-243 844.0 511 85.5
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.4e-242 842.8 511 84.7
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 2.4e-242 842.0 510 84.5
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 2.6e-241 838.6 505 86.7
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 2.6e-241 838.6 510 83.5
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 5.8e-241 837.4 510 83.5
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 5.8e-241 837.4 512 85.7
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 5.8e-241 837.4 511 84.7
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 7.6e-241 837.0 494 86.0
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 7.6e-241 837.0 511 84.7
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 9.9e-241 836.6 556 80.0
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 83.9
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 83.9
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.9e-240 835.1 494 86.2
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 2.9e-240 835.1 510 83.7
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 6.4e-240 833.9 510 83.7
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 6.4e-240 833.9 503 86.5
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.9e-239 832.4 511 83.6
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 1.9e-239 832.4 472 91.3
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 3.5e-238 828.2 524 82.4
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.3e-236 821.6 494 85.6
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 9.6e-236 820.1 494 86.8
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 4.8e-235 817.8 489 85.1
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.8e-229 799.3 547 77.0
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 3.9e-229 798.1 511 80.6
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 6.7e-229 797.3 511 80.2
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 3.6e-227 791.6 472 91.1
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 6.9e-226 787.3 512 80.3
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 9.0e-226 786.9 512 81.6
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.4e-225 785.0 524 80.0
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.4e-225 785.0 524 80.0
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.3e-224 783.1 511 78.7
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 8.4e-224 780.4 510 81.6
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 8.4e-224 780.4 511 79.6
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 3.0e-221 771.9 510 79.8
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.3e-216 756.5 441 86.6
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 7.9e-206 720.7 511 75.9
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 6.3e-203 711.1 503 75.5
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.1e-202 710.3 413 88.4
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.8e-197 693.0 510 73.7
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 5.5e-191 671.4 514 65.6
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.0e-188 662.9 503 68.8
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 4.5e-185 651.7 468 73.5
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 8.5e-184 647.5 375 88.0
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.1e-175 620.5 514 61.5
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 2.2e-171 606.3 364 87.1
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 1.1e-170 604.0 365 86.8
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 3.8e-168 595.5 511 61.3
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 3.8e-168 595.5 379 81.8
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 1.6e-166 590.1 511 60.3
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 1.4e-165 587.0 504 66.7
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.5e-164 581.3 496 59.5
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 9.5e-159 564.3 325 91.7
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 8.0e-158 561.2 501 56.3
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.0e-157 559.3 347 84.1
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 1.2e-150 537.3 307 92.8
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.7e-150 535.4 457 67.8
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.0e-141 505.8 284 93.7
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 6.4e-131 471.9 383 62.1
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.6e-121 440.7 254 87.0
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 4.9e-115 419.1 513 46.0
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.6e-113 412.5 245 89.4
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 9.3e-106 388.3 486 43.8
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.2e-105 387.9 386 54.7
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 5.6e-103 379.0 267 75.7
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 4.3e-95 352.8 511 38.9
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.9e-83 313.5 199 85.9
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.6e-71 273.9 345 47.0
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 1.5e-66 258.1 503 38.0
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.3e-59 235.0 144 84.7
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.2e-58 229.9 289 46.0
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.3e-56 224.2 365 41.1
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 3.6e-49 200.3 117 82.1
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.4e-45 187.6 206 51.9
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 9.2e-45 185.7 143 73.4
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.5e-42 178.3 197 51.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.3e-35 154.5 106 75.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.3e-30 138.7 119 57.1
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 2.7e-28 131.0 82 84.1
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 2.9e-22 110.9 156 48.1
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.3e-11 75.5 67 58.2
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 1.6e-09 68.6 39 82.1
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 2.4e-08 64.7 37 81.1


User provided reference genes

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