Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.1e-131 473.4 258 100.0
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.2e-96 357.1 222 90.5
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 9.2e-94 347.4 258 75.2
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 3.9e-92 342.0 222 88.7
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 8.1e-74 281.2 257 61.1
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.9e-67 260.0 258 56.2
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 4.8e-66 255.4 246 61.8
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.3e-63 247.3 256 55.5
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 3.2e-62 242.7 221 59.7
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 7.1e-62 241.5 249 59.0
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.6e-61 240.4 257 53.7
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 2.1e-61 240.0 260 55.4
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 2.7e-61 239.6 247 54.3
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.7e-61 239.6 249 58.6
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.9e-60 235.7 224 57.6
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.5e-59 233.8 258 53.9
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.5e-59 233.8 257 55.3
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 2.5e-59 233.0 257 51.4
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 4.8e-58 228.8 257 54.9
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 4.8e-58 228.8 258 54.7
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 6.2e-58 228.4 257 50.2
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 8.1e-58 228.0 257 54.1
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 8.1e-58 228.0 238 55.5
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.4e-57 227.3 223 55.6
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 1.4e-57 227.3 240 53.8
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.4e-57 227.3 261 53.6
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.1e-57 226.1 257 49.8
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 6.9e-57 224.9 258 53.1
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.5e-56 223.8 257 49.8
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.0e-56 223.4 260 52.7
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 2.0e-56 223.4 260 53.1
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.0e-56 223.4 257 52.5
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 3.4e-56 222.6 262 52.3
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.8e-56 221.9 267 50.2
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 5.8e-56 221.9 256 52.3
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 1.0e-55 221.1 241 55.2
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.0e-55 221.1 259 52.1
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 1.7e-55 220.3 257 53.7
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 2.9e-55 219.5 259 54.1
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 6.5e-55 218.4 261 54.4
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 3.2e-54 216.1 251 48.6
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 4.2e-54 215.7 262 51.5
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 7.1e-54 214.9 221 57.9
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 7.1e-54 214.9 262 49.2
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 9.3e-54 214.5 257 51.0
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 2.7e-53 213.0 240 53.3
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.0e-52 211.1 249 51.4
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 3.0e-52 209.5 287 48.1
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 3.9e-52 209.1 240 51.7
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.9e-52 209.1 256 52.0
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 5.1e-52 208.8 257 51.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 1.1e-51 207.6 220 56.8
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 1.1e-51 207.6 241 53.9
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 1.9e-51 206.8 222 55.9
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 7.4e-51 204.9 206 55.3
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.3e-50 204.1 206 58.3
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 2.1e-50 203.4 262 49.6
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 6.3e-50 201.8 247 51.0
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.8e-49 200.3 224 53.6
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 4.1e-49 199.1 252 49.2
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 4.1e-49 199.1 242 52.5
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 2.0e-48 196.8 247 50.6
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.6e-48 196.4 259 50.2
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.6e-48 196.4 259 50.2
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 3.4e-48 196.1 256 49.2
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 3.4e-48 196.1 249 53.4
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 4.5e-48 195.7 247 49.0
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 7.6e-48 194.9 259 52.1
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 2.2e-47 193.4 247 49.4
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 2.2e-47 193.4 247 49.4
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 2.9e-47 193.0 246 49.6
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 5.0e-47 192.2 247 48.2
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 5.0e-47 192.2 259 51.7
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.9e-46 190.3 262 49.6
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 5.5e-46 188.7 247 47.8
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 5.5e-46 188.7 263 47.5
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 7.2e-46 188.3 247 47.8
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 7.2e-46 188.3 260 50.8
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 9.3e-46 188.0 209 56.0
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 3.5e-45 186.0 261 46.4
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 1.0e-44 184.5 257 49.4
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.8e-44 183.7 218 50.9
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 3.0e-44 183.0 251 49.4
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.5e-43 179.9 266 47.4
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 2.5e-43 179.9 255 45.5
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 7.4e-43 178.3 260 44.6
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 7.4e-43 178.3 214 50.9
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 1.6e-42 177.2 258 47.7
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.6e-42 177.2 275 48.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.1e-41 174.5 260 45.0
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.8e-41 173.7 257 47.9
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.8e-41 173.7 239 47.3
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 2.0e-40 170.2 260 43.1
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 5.9e-40 168.7 259 45.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 5.9e-40 168.7 201 53.7
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.2e-39 166.8 214 49.5
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 2.2e-39 166.8 255 41.2
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.1e-38 164.5 242 47.9
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 2.5e-38 163.3 256 44.1
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.5e-38 163.3 236 47.5
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 5.5e-38 162.2 252 45.2
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 4.6e-37 159.1 259 44.4
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 6.1e-37 158.7 241 44.4
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 1.4e-36 157.5 260 44.2
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 8.8e-36 154.8 258 43.8
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 7.4e-35 151.8 144 58.3
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 1.3e-34 151.0 235 41.3
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.3e-34 151.0 260 43.5
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.7e-34 150.6 232 46.1
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 6.3e-34 148.7 129 61.2
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 4.1e-33 146.0 145 55.2
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 6.9e-33 145.2 175 46.9
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 5.0e-31 139.0 260 41.2
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 8.5e-31 138.3 245 42.0
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 8.5e-31 138.3 263 41.1
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.4e-30 137.5 193 45.1
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 3.0e-28 129.8 150 50.7
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 2.2e-26 123.6 239 39.3
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 2.8e-26 123.2 231 32.9
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 1.4e-25 120.9 191 40.8
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.9e-24 115.5 209 34.0
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 7.2e-22 108.6 202 33.7
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 2.7e-21 106.7 246 29.7
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.4e-20 104.4 146 42.5
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.3e-18 97.8 236 28.4
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.7e-18 97.4 181 34.8
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 1.8e-17 94.0 97 53.6
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 4.1e-17 92.8 116 48.3
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.5e-16 89.7 82 58.5
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 7.2e-14 82.0 78 53.8
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 9.4e-14 81.6 230 27.0
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 8.0e-13 78.6 215 27.4
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.4e-11 73.2 83 49.4
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 2.2e-10 70.5 236 23.7
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 8.3e-10 68.6 77 44.2
Nn2g13608 Nelumbo nucifera HOM05D005866 ORTHO05D007078 3.5e-08 63.2 65 52.3
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 7.7e-08 62.0 69 47.8
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 1.5e-06 57.8 82 43.9
SEGI_22580 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 4.2e-06 56.2 221 22.2


User provided reference genes

Program Settings