Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 1.4e-58 229.6 127 100.0
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 8.7e-53 210.3 127 91.3
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 4.9e-32 141.4 129 62.8
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 7.4e-20 100.9 121 57.0
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 2.6e-17 92.4 116 50.0
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.3e-16 90.1 102 52.0
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 2.2e-16 89.4 102 52.0
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 3.8e-16 88.6 148 45.3
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 3.8e-16 88.6 148 45.3
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 2.5e-15 85.9 127 47.2
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 4.2e-15 85.1 93 54.8
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 4.2e-15 85.1 144 43.1
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 5.5e-15 84.7 118 45.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.5e-15 84.7 130 44.6
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.2e-14 83.6 144 42.4
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.2e-14 83.6 139 43.9
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 2.7e-14 82.4 108 48.1
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 7.9e-14 80.9 104 48.1
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 7.9e-14 80.9 114 43.9
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.0e-13 80.5 97 52.6
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 1.4e-13 80.1 151 41.7
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 3.0e-13 79.0 163 39.9
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.9e-13 78.6 117 45.3
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.9e-13 78.6 160 41.2
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 5.1e-13 78.2 160 39.4
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 8.8e-13 77.4 129 42.6
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 8.8e-13 77.4 169 40.2
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 8.8e-13 77.4 105 47.6
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.1e-12 77.0 123 43.9
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.1e-12 77.0 116 44.8
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.1e-12 77.0 123 43.9
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 1.1e-12 77.0 110 42.7
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.5e-12 76.6 144 38.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 2.5e-12 75.9 126 46.8
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 2.5e-12 75.9 138 38.4
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 3.3e-12 75.5 137 42.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 3.3e-12 75.5 114 43.9
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.3e-12 75.5 105 45.7
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 7.4e-12 74.3 107 43.0
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 1.7e-11 73.2 94 43.6
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.7e-11 73.2 114 43.9
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 2.2e-11 72.8 118 41.5
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.8e-11 72.4 99 45.5
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.8e-11 72.4 100 48.0
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 3.7e-11 72.0 94 47.9
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 8.2e-11 70.9 124 41.9
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.4e-10 70.1 119 42.0
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.8e-10 69.7 128 41.4
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 1.8e-10 69.7 162 39.5
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.8e-10 69.7 116 40.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 2.4e-10 69.3 142 38.7
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 3.1e-10 68.9 107 44.9
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 4.1e-10 68.6 101 45.5
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 5.3e-10 68.2 102 44.1
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 5.3e-10 68.2 143 38.5
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 6.9e-10 67.8 89 50.6
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 6.9e-10 67.8 110 40.0
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 9.1e-10 67.4 103 45.6
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.5e-09 66.6 99 43.4
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 2.6e-09 65.9 50 64.0
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 2.6e-09 65.9 50 64.0
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 3.4e-09 65.5 97 45.4
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 5.9e-09 64.7 116 43.1
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 5.9e-09 64.7 83 45.8
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.9e-09 64.7 96 45.8
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 7.7e-09 64.3 38 73.7
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 1.3e-08 63.5 63 52.4
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 1.7e-08 63.2 64 54.7
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 2.2e-08 62.8 55 60.0
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.9e-08 62.4 93 43.0
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 2.9e-08 62.4 66 56.1
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.8e-08 62.0 99 41.4
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 6.5e-08 61.2 108 39.8
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 1.1e-07 60.5 87 47.1
Nn2g11287 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.1e-07 60.5 75 40.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.4e-07 60.1 53 58.5
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 2.5e-07 59.3 151 35.8
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 3.2e-07 58.9 77 44.2
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 7.2e-07 57.8 64 50.0
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.2e-07 57.8 85 41.2
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.2e-07 57.8 85 41.2
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 7.2e-07 57.8 69 49.3
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.2e-06 57.0 74 41.9
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.2e-06 57.0 45 57.8
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.6e-06 56.6 74 45.9
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.6e-06 56.6 56 55.4
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.6e-06 56.6 50 52.0
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.6e-06 56.6 41 61.0
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.7e-06 55.8 50 52.0
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 2.7e-06 55.8 56 53.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.6e-06 55.5 67 44.8
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 3.6e-06 55.5 161 32.3
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.6e-06 55.5 93 36.6
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 4.7e-06 55.1 52 51.9
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.7e-06 55.1 129 35.7
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.7e-06 55.1 129 35.7
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.7e-06 55.1 94 38.3
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 4.7e-06 55.1 49 53.1
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 6.1e-06 54.7 57 52.6
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 6.1e-06 54.7 36 63.9
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 6.1e-06 54.7 43 58.1
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.1e-06 54.7 43 58.1
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.1e-06 54.7 43 58.1
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.1e-06 54.7 43 58.1
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.1e-06 54.7 43 58.1
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 7.9e-06 54.3 80 43.8
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 7.9e-06 54.3 62 46.8


User provided reference genes

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