Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 7.7e-108 394.0 230 100.0
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 2.8e-102 375.6 230 95.2
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 4.4e-95 351.7 230 76.5
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 5.3e-85 318.2 231 70.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 4.5e-84 315.1 230 71.3
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 7.0e-69 264.6 230 70.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.3e-67 259.6 230 68.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.4e-64 250.4 226 57.1
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.8e-64 250.0 231 55.8
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.8e-64 250.0 230 56.1
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.3e-64 249.6 226 56.2
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 6.8e-64 248.1 224 62.1
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 8.9e-64 247.7 229 54.6
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.5e-63 246.9 231 54.5
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 2.0e-63 246.5 227 57.3
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 3.7e-62 242.3 231 53.2
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 8.3e-62 241.1 231 67.1
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 8.3e-62 241.1 231 67.1
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.1e-61 240.7 229 55.0
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 3.1e-61 239.2 231 62.3
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 5.4e-61 238.4 231 65.4
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.7e-60 236.1 254 49.2
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 3.5e-60 235.7 231 54.1
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.5e-60 235.7 231 67.5
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 3.5e-60 235.7 224 53.1
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 7.8e-60 234.6 190 58.9
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.3e-59 233.8 230 53.9
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.7e-59 233.4 224 54.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.7e-59 233.4 223 54.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 6.6e-59 231.5 238 51.7
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.1e-58 230.7 230 53.9
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.1e-58 230.7 219 53.9
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-58 230.3 203 56.2
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.5e-58 230.3 231 54.5
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.9e-58 229.9 231 64.9
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.5e-58 229.6 217 56.7
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.1e-57 226.5 223 51.6
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.1e-57 226.5 231 56.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.6e-57 225.7 231 49.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.7e-57 225.3 226 53.1
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 4.7e-57 225.3 232 52.6
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 6.1e-57 224.9 221 53.8
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 8.0e-57 224.6 229 51.1
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 8.0e-57 224.6 223 51.6
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 8.0e-57 224.6 212 54.2
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.0e-56 224.2 200 56.5
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.4e-56 223.8 223 54.3
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.4e-56 223.8 195 55.4
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.4e-56 223.8 200 55.0
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 2.3e-56 223.0 230 49.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.1e-56 222.6 205 54.1
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 3.1e-56 222.6 195 54.4
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 3.1e-56 222.6 222 56.3
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 4.0e-56 222.2 221 53.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 6.8e-56 221.5 205 54.1
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 8.9e-56 221.1 226 51.3
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.4e-55 219.2 226 52.2
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 4.4e-55 218.8 205 53.2
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 5.8e-55 218.4 229 49.3
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 7.5e-55 218.0 262 46.2
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 9.8e-55 217.6 198 56.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 1.3e-54 217.2 218 52.8
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.9e-54 216.1 195 54.4
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.7e-54 215.7 230 59.1
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.7e-54 215.7 231 48.5
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.7e-54 215.7 225 53.3
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 4.9e-54 215.3 215 53.0
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.9e-54 215.3 222 55.9
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.9e-54 215.3 212 52.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 4.9e-54 215.3 228 50.4
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.3e-54 214.5 226 50.4
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.1e-53 214.2 199 52.8
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.4e-53 213.8 213 52.6
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.9e-53 213.4 194 55.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.9e-53 213.4 233 55.8
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.9e-53 213.4 229 57.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 2.4e-53 213.0 216 50.0
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.4e-53 213.0 200 51.5
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.4e-53 213.0 213 52.1
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.2e-53 212.6 230 50.9
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 4.1e-53 212.2 226 51.8
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 7.0e-53 211.5 216 53.7
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 7.0e-53 211.5 207 51.2
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 9.2e-53 211.1 199 53.3
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.2e-52 210.7 146 68.5
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.6e-52 210.3 216 50.5
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.6e-52 210.3 229 53.3
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.6e-52 210.3 242 47.9
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.0e-52 209.9 207 50.7
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.7e-52 209.5 199 51.3
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 3.5e-52 209.1 222 48.6
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.0e-51 207.6 230 53.5
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.0e-51 207.6 221 56.1
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.0e-51 207.6 207 50.7
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.7e-51 206.8 197 52.3
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.7e-51 206.8 222 49.1
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.3e-51 206.5 201 51.7
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 3.0e-51 206.1 146 65.8
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 5.0e-51 205.3 216 49.5
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.5e-50 203.8 221 46.6
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.5e-50 203.0 199 51.3
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.5e-50 203.0 198 49.5
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 4.3e-50 202.2 216 49.1
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 7.3e-50 201.4 230 56.5
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.2e-49 200.7 197 51.8
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.1e-49 199.9 250 46.0
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.1e-49 199.9 250 48.0
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.1e-49 199.9 220 53.6
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.7e-49 198.7 216 48.1
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 6.2e-49 198.4 196 51.5
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 8.0e-49 198.0 207 47.8
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.3e-48 196.4 216 47.7
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.3e-48 196.4 216 49.1
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.1e-48 196.1 199 48.2
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.2e-47 194.1 234 51.7
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 3.4e-47 192.6 216 47.2
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.4e-47 192.6 271 40.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 5.8e-47 191.8 232 57.3
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 9.8e-47 191.0 216 46.8
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 9.8e-47 191.0 195 48.7
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.2e-46 189.9 198 51.5
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 6.4e-46 188.3 199 48.2
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.4e-45 186.4 199 47.2
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 4.1e-45 185.7 227 46.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 9.2e-45 184.5 194 46.9
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 2.1e-44 183.3 121 65.3
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.3e-43 179.9 215 43.3
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.1e-42 177.6 213 42.7
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.3e-42 175.6 200 43.5
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 5.6e-42 175.3 202 47.0
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-41 173.7 217 47.5
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 4.7e-41 172.2 217 46.5
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 6.2e-41 171.8 205 47.3
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.1e-41 171.4 230 41.3
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.4e-40 170.6 200 56.5
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.2e-40 168.7 230 39.6
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 2.6e-39 166.4 197 48.7
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 4.4e-39 165.6 217 49.8
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.3e-38 164.1 242 38.8
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 3.7e-38 162.5 217 49.3
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 2.4e-37 159.8 230 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.2e-37 159.5 214 41.1
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 5.4e-37 158.7 198 40.4
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.2e-36 157.5 219 40.2
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.1e-36 156.8 197 41.1
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.1e-36 156.8 197 41.1
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 2.7e-36 156.4 233 39.1
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 4.6e-36 155.6 145 53.8
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.3e-35 153.3 150 55.3
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 3.0e-35 152.9 239 47.7
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.6e-33 146.0 138 48.6
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.1e-32 144.4 145 62.8
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.2e-28 131.0 144 48.6
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.7e-28 129.8 207 37.2
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.5e-26 124.0 142 45.1
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 2.1e-25 120.2 164 41.5
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 8.1e-25 118.2 161 41.0
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-21 107.8 231 32.9
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-21 105.9 230 31.7
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.3e-19 100.1 181 34.3
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.3e-19 100.1 144 37.5
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.1e-19 99.0 144 36.8
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.4e-14 82.0 68 57.4
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.4e-13 80.9 110 41.8
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 2.4e-13 80.1 72 52.8
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.7e-12 76.6 53 62.3
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.3e-11 73.6 55 60.0
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.3e-10 69.7 38 86.8
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.3e-10 69.3 159 30.8
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 4.8e-09 65.9 35 80.0
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 1.1e-08 64.7 35 77.1
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 7.6e-07 58.5 35 71.4
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.7e-06 57.4 30 83.3
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 3.8e-06 56.2 115 31.3


User provided reference genes

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