Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 5.1e-96 354.4 173 100.0
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 7.6e-92 340.5 173 96.5
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 3.1e-77 292.0 173 83.8
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.8e-69 266.2 173 78.6
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.4e-61 240.0 173 74.0
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 5.0e-43 178.3 156 54.5
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 9.4e-42 174.1 162 55.6
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.8e-40 169.9 164 50.0
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 3.0e-40 169.1 162 54.9
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.1e-39 167.2 170 51.8
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 4.3e-39 165.2 146 54.8
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 1.3e-38 163.7 159 51.6
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 1.7e-38 163.3 130 63.1
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 4.8e-38 161.8 162 52.5
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 6.3e-38 161.4 137 60.6
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.4e-37 160.2 119 63.9
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.8e-37 159.8 146 52.7
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.8e-37 159.8 161 49.7
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.4e-37 159.5 149 54.4
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.3e-37 158.3 153 53.6
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 9.1e-37 157.5 161 49.1
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 3.4e-36 155.6 164 50.6
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 2.9e-35 152.5 143 53.8
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 3.8e-35 152.1 170 51.2
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.4e-34 150.2 149 49.7
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.4e-34 150.2 145 53.1
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.5e-34 149.4 141 52.5
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 2.5e-34 149.4 164 45.7
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 3.2e-34 149.1 135 53.3
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 9.4e-34 147.5 130 56.2
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 9.4e-34 147.5 130 56.2
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 9.4e-34 147.5 164 45.1
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 9.4e-34 147.5 179 44.1
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.2e-33 147.1 138 54.3
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.2e-33 147.1 163 47.9
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.2e-33 147.1 166 48.8
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 1.2e-33 147.1 135 56.3
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.6e-33 146.7 157 47.1
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 3.6e-33 145.6 157 46.5
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.6e-33 145.6 157 46.5
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.6e-33 145.6 130 56.2
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 7.9e-33 144.4 176 44.9
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 7.9e-33 144.4 122 54.9
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 7.9e-33 144.4 165 46.1
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 1.0e-32 144.1 142 52.1
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.0e-32 144.1 145 46.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 1.8e-32 143.3 152 47.4
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 2.3e-32 142.9 167 47.3
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 3.0e-32 142.5 152 47.4
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 5.1e-32 141.7 146 50.7
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 6.7e-32 141.4 147 51.0
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.5e-31 140.2 154 48.7
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 2.6e-31 139.4 113 54.9
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 2.6e-31 139.4 120 55.0
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 3.3e-31 139.0 133 51.1
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 4.4e-31 138.7 145 48.3
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.4e-31 138.7 154 47.4
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 5.7e-31 138.3 167 46.1
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 7.4e-31 137.9 131 51.9
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 7.4e-31 137.9 110 59.1
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 9.7e-31 137.5 154 46.8
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.3e-30 137.1 167 46.1
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 1.3e-30 137.1 142 47.2
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.7e-30 136.7 148 48.0
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 1.7e-30 136.7 132 50.0
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 2.8e-30 136.0 156 46.2
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 3.7e-30 135.6 149 48.3
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 3.7e-30 135.6 167 44.9
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 3.7e-30 135.6 156 46.2
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 6.3e-30 134.8 129 54.3
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 8.2e-30 134.4 120 50.8
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 1.4e-29 133.7 143 47.6
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 4.1e-29 132.1 120 51.7
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 5.3e-29 131.7 126 46.8
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.2e-28 130.6 125 52.8
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.5e-28 130.2 131 46.6
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 2.0e-28 129.8 164 42.7
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 2.6e-28 129.4 99 59.6
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 7.7e-28 127.9 131 46.6
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.0e-27 127.5 110 54.5
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.0e-27 127.5 110 54.5
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 1.0e-27 127.5 142 47.9
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 1.3e-27 127.1 187 37.4
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.9e-27 125.9 131 47.3
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 5.0e-27 125.2 131 48.1
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 5.0e-27 125.2 131 46.6
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 8.5e-27 124.4 135 48.1
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 1.9e-26 123.2 132 47.7
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 1.9e-26 123.2 135 48.1
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.5e-26 122.9 157 43.3
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 3.2e-26 122.5 132 46.2
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 9.4e-26 120.9 122 47.5
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 1.2e-25 120.6 140 45.7
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 1.4e-24 117.1 131 43.5
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 5.2e-24 115.2 187 38.5
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 4.4e-23 112.1 136 43.4
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 4.8e-22 108.6 173 37.0
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 8.2e-22 107.8 127 44.1
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 3.5e-20 102.4 113 42.5
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 7.7e-20 101.3 121 40.5
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 3.8e-19 99.0 70 60.0
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 4.2e-18 95.5 154 35.1
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 5.5e-18 95.1 110 43.6
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 8.0e-17 91.3 148 37.2
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 3.4e-15 85.9 90 46.7
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.7e-15 85.1 118 37.3
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 9.8e-15 84.3 91 47.3
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.5e-10 70.5 74 41.9
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 3.4e-07 59.3 56 44.6
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 3.4e-07 59.3 96 40.6
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.2e-06 56.6 52 48.1
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.8e-06 56.2 113 30.1
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 4.9e-06 55.5 132 29.5


User provided reference genes

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