Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.0e-122 442.6 250 100.0
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.5e-112 409.8 254 87.8
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 7.3e-96 354.4 255 81.2
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 1.5e-56 223.8 258 58.5
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 8.5e-36 154.8 241 48.1
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.5e-27 125.6 279 37.6
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 3.6e-26 122.9 280 36.4
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 3.6e-26 122.9 280 36.1
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.0e-25 121.3 263 38.4
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.7e-25 118.6 279 36.6
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.7e-25 118.6 277 36.8
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 2.0e-24 117.1 265 36.6
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.3e-23 114.4 244 36.1
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 3.7e-23 112.8 279 33.7
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.8e-22 110.5 252 39.3
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.1e-22 109.8 273 35.9
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.0e-21 107.1 248 38.7
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.9e-20 103.2 96 61.5
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.1e-19 101.3 226 37.6
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.5e-19 100.1 256 35.2
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.2e-19 99.8 282 37.2
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.5e-19 99.0 87 63.2
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 9.4e-19 98.2 239 40.2
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 9.4e-19 98.2 76 69.7
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.2e-18 97.8 257 35.4
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.6e-18 97.4 271 32.8
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.6e-18 97.4 281 32.7
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.7e-18 96.7 281 35.9
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.6e-18 96.3 253 33.6
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 6.1e-18 95.5 81 65.4
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.0e-18 95.1 248 39.1
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.0e-18 95.1 87 63.2
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.0e-17 94.7 87 60.9
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 2.3e-17 93.6 274 31.4
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 3.0e-17 93.2 85 62.4
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.8e-17 92.0 212 38.2
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 8.8e-17 91.7 76 61.8
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 8.8e-17 91.7 253 33.6
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.2e-16 91.3 253 34.4
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.0e-16 90.5 255 33.3
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 2.0e-16 90.5 96 53.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 5.7e-16 89.0 241 36.9
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.7e-16 89.0 74 66.2
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 7.5e-16 88.6 87 57.5
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 9.8e-16 88.2 244 36.5
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 9.8e-16 88.2 244 41.4
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 9.8e-16 88.2 178 39.3
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 9.8e-16 88.2 238 31.9
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 9.8e-16 88.2 87 54.0
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.8e-15 86.7 324 29.9
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 3.7e-15 86.3 80 61.2
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.7e-15 86.3 255 32.2
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 3.7e-15 86.3 238 38.2
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 4.8e-15 85.9 78 60.3
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 8.3e-15 85.1 74 64.9
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 8.3e-15 85.1 96 55.2
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 8.3e-15 85.1 81 55.6
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.1e-14 84.7 224 32.6
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.4e-14 84.3 69 69.6
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.8e-14 84.0 69 66.7
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 2.4e-14 83.6 80 60.0
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.4e-14 83.6 247 32.4
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 2.4e-14 83.6 237 32.5
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.1e-14 83.2 240 29.2
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 3.1e-14 83.2 90 56.7
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 4.1e-14 82.8 87 51.7
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 4.1e-14 82.8 85 56.5
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 4.1e-14 82.8 69 65.2
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 5.4e-14 82.4 214 33.6
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 7.0e-14 82.0 74 62.2
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 7.0e-14 82.0 83 59.0
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 9.1e-14 81.6 71 63.4
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 9.1e-14 81.6 71 63.4
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 9.1e-14 81.6 78 60.3
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 9.1e-14 81.6 83 56.6
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 9.1e-14 81.6 240 34.6
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 9.1e-14 81.6 285 27.7
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 9.1e-14 81.6 249 32.9
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.2e-13 81.3 241 32.4
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.2e-13 81.3 74 62.2
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 1.2e-13 81.3 238 31.1
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 2.0e-13 80.5 86 59.3
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 2.7e-13 80.1 71 63.4
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.7e-13 80.1 87 56.3
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 3.5e-13 79.7 77 61.0
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.5e-13 79.3 257 31.9
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 7.7e-13 78.6 80 52.5
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 7.7e-13 78.6 69 63.8
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 7.7e-13 78.6 67 62.7
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.0e-12 78.2 258 30.6
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-12 77.8 258 31.0
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.3e-12 77.8 83 56.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.3e-12 77.8 83 56.6
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 2.3e-12 77.0 299 29.1
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 2.3e-12 77.0 81 58.0
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 2.9e-12 76.6 73 60.3
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 2.9e-12 76.6 144 40.3
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 3.8e-12 76.3 182 37.9
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 5.0e-12 75.9 260 29.6
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 5.0e-12 75.9 74 58.1
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 8.6e-12 75.1 67 64.2
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 1.5e-11 74.3 77 55.8
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.5e-11 74.3 67 62.7
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.9e-11 73.9 273 31.9
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 2.5e-11 73.6 267 31.8
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.5e-11 73.6 76 53.9
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.5e-11 73.6 71 57.7
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 4.2e-11 72.8 71 56.3
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 4.2e-11 72.8 74 59.5
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 7.2e-11 72.0 143 41.3
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 7.2e-11 72.0 96 54.2
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 7.2e-11 72.0 256 31.2
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 7.2e-11 72.0 87 50.6
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 1.2e-10 71.2 230 37.0
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.6e-10 70.9 64 59.4
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.6e-10 70.9 224 32.1
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.6e-10 70.9 77 54.5
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.1e-10 70.5 243 30.9
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 3.6e-10 69.7 83 49.4
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 4.7e-10 69.3 81 54.3
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 8.0e-10 68.6 56 62.5
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 8.0e-10 68.6 71 53.5
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 2.3e-09 67.0 264 29.5
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 4.0e-09 66.2 64 56.2
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 5.7e-08 62.4 247 29.1
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 9.8e-08 61.6 70 52.9
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.3e-07 61.2 231 29.0
BcaB01g03781 Brassica carinata HOM05D004973 ORTHO05D006119 5.4e-06 55.8 44 70.5
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 9.2e-06 55.1 61 47.5
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 9.2e-06 55.1 81 46.9


User provided reference genes

Program Settings