Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 0.0e+00 1263.8 850 100.0
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 0.0e+00 1119.4 852 91.1
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 0.0e+00 1085.9 860 74.1
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 8.9e-287 990.3 850 80.7
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 4.6e-190 669.1 861 58.3
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 2.1e-187 660.2 861 65.9
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 2.6e-185 653.3 832 59.0
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.3e-184 651.0 853 58.0
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 9.2e-183 644.8 858 58.2
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 2.7e-182 643.3 830 58.3
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.6e-182 642.5 864 56.7
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.1e-180 637.9 860 57.9
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 7.3e-180 635.2 858 63.4
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 2.1e-179 633.6 862 57.2
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 3.1e-178 629.8 882 56.8
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.2e-177 627.9 843 57.8
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.0e-177 627.1 799 58.8
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 9.8e-177 624.8 861 57.0
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 9.8e-177 624.8 858 56.6
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 3.7e-176 622.9 858 57.3
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 3.7e-176 622.9 853 56.0
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 6.4e-176 622.1 864 56.6
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 9.2e-175 618.2 858 55.6
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 2.7e-174 616.7 856 63.8
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 2.5e-172 610.1 861 56.2
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 5.6e-172 609.0 857 54.5
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 5.8e-169 599.0 853 56.9
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 1.4e-167 594.3 805 57.4
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 7.1e-167 592.0 653 65.8
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 2.3e-165 587.0 659 64.8
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 5.1e-165 585.9 660 63.3
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.5e-164 583.6 720 61.4
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 9.6e-164 581.6 659 64.2
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 3.6e-163 579.7 658 63.8
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 4.7e-163 579.3 695 62.3
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 8.1e-163 578.6 658 64.3
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.5e-161 574.3 859 53.9
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 6.4e-160 568.9 652 62.9
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 6.4e-160 568.9 770 57.1
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.1e-159 568.2 658 63.7
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 1.3e-157 561.2 877 47.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 6.6e-157 558.9 872 52.1
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 2.5e-156 557.0 790 54.7
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 2.5e-156 557.0 790 54.7
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 3.3e-156 556.6 865 46.5
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 5.6e-156 555.8 830 54.8
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 7.3e-156 555.4 794 54.9
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 7.3e-156 555.4 794 54.9
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 7.3e-156 555.4 813 55.6
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 9.6e-156 555.1 799 55.9
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 2.1e-155 553.9 836 54.7
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 3.6e-155 553.1 656 61.1
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 6.2e-155 552.4 873 52.0
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.1e-154 551.6 689 52.0
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.1e-154 551.6 689 52.0
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 1.4e-154 551.2 836 54.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 4.0e-154 549.7 870 51.8
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 2.0e-153 547.4 869 51.1
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 4.5e-153 546.2 873 51.8
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.3e-152 544.7 846 48.0
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 1.9e-151 540.8 797 61.5
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 7.1e-151 538.9 796 61.1
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 4.6e-150 536.2 842 52.1
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 6.0e-150 535.8 805 54.4
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 2.3e-149 533.9 826 51.0
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 8.7e-149 531.9 779 54.0
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 4.3e-148 529.6 780 54.7
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 3.6e-147 526.6 868 51.7
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.6e-147 526.6 839 46.4
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 4.8e-147 526.2 846 50.6
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 3.1e-146 523.5 858 52.1
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 9.0e-146 521.9 658 61.1
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 2.0e-145 520.8 902 43.2
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.4e-143 514.6 834 48.9
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 2.1e-142 510.8 659 60.8
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 2.7e-142 510.4 808 52.2
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 6.7e-141 505.8 821 46.3
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 2.5e-140 503.8 668 59.3
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 2.1e-139 500.7 870 44.6
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 4.0e-138 496.5 857 50.6
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 9.0e-138 495.4 830 49.9
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 1.4e-135 488.0 822 51.5
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 3.5e-134 483.4 588 64.3
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 3.3e-124 450.3 779 41.5
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 1.6e-123 448.0 815 50.3
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 2.2e-115 421.0 760 48.0
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 1.1e-111 408.7 654 45.7
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 1.3e-107 395.2 521 63.9
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 1.7e-99 368.2 800 43.9
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 7.2e-87 326.2 655 34.2
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 8.3e-83 312.8 591 45.7
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 1.5e-79 302.0 534 56.4
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 2.0e-76 291.6 404 64.1
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 2.6e-76 291.2 391 56.5
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.7e-64 251.9 681 45.4
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.4e-61 242.3 702 42.3
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.2e-58 231.1 657 42.8
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 3.0e-48 198.0 229 51.1
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.3e-43 182.6 224 48.2
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 5.1e-40 170.6 310 47.7
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.8e-37 162.2 239 41.0
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 6.4e-35 153.7 380 38.2
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.4e-18 99.4 205 36.6
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 6.7e-16 90.5 106 43.4
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 8.2e-14 83.6 74 51.4
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 6.5e-11 73.9 161 58.4
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.4e-10 72.8 72 58.3
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 3.0e-08 65.1 202 26.7
AagrBONN_evm.TU.Sc2ySwM_344.147 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-07 60.1 177 23.7
AagrBONN_evm.TU.Sc2ySwM_344.1566 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-07 60.1 198 22.7
VMungo1215G1316 Vigna mungo HOM05D000001 ORTHO05D000003 9.7e-07 60.1 169 23.1
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 1.3e-06 59.7 150 24.7
AagrBONN_evm.TU.Sc2ySwM_368.1667 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 58.5 216 21.3
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 4.8e-06 57.8 176 23.3
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 6.3e-06 57.4 177 23.7


User provided reference genes

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