Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.7e-113 412.1 229 100.0
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.8e-112 409.5 229 98.3
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 5.8e-108 394.4 229 93.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 5.3e-101 371.3 228 89.5
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 6.9e-101 370.9 230 88.7
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 9.0e-101 370.5 230 90.4
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.2e-100 370.2 230 88.7
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.2e-100 370.2 230 90.0
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.2e-100 370.2 230 90.4
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.2e-100 370.2 230 90.0
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.2e-100 370.2 230 88.7
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.0e-100 369.4 230 90.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 7.6e-100 367.5 230 88.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 7.6e-100 367.5 230 89.1
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.0e-99 367.1 230 88.7
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.0e-99 367.1 230 87.8
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.3e-99 366.7 229 89.1
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.3e-99 366.7 227 88.1
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.7e-99 366.3 229 87.8
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.2e-99 365.9 229 88.6
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.9e-99 365.5 230 88.3
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.9e-99 365.5 230 89.1
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.8e-99 365.2 230 89.1
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.8e-99 365.2 230 88.3
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 4.9e-99 364.8 227 87.7
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 4.9e-99 364.8 230 87.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 6.5e-99 364.4 230 87.8
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 8.4e-99 364.0 230 89.1
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 8.4e-99 364.0 230 88.3
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.1e-98 363.6 230 87.8
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.4e-98 363.2 230 86.5
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.4e-98 363.2 228 87.3
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.4e-98 363.2 228 87.3
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.4e-98 363.2 230 87.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.4e-98 363.2 230 88.3
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.4e-98 363.2 230 88.3
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.4e-98 363.2 230 87.4
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.9e-98 362.8 230 87.8
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.9e-98 362.8 230 88.7
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.5e-98 362.5 230 87.4
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 2.5e-98 362.5 230 87.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 3.2e-98 362.1 230 87.8
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 4.2e-98 361.7 230 86.5
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.2e-98 361.7 230 87.8
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.2e-98 361.7 229 88.6
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 4.2e-98 361.7 230 87.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 5.5e-98 361.3 233 86.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.5e-98 361.3 230 87.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 9.3e-98 360.5 230 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.6e-97 359.8 230 87.4
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.1e-97 359.4 230 87.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.1e-97 359.4 230 87.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.1e-97 359.4 230 86.5
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 2.1e-97 359.4 230 87.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 2.1e-97 359.4 230 87.0
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.7e-97 359.0 230 86.5
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 3.5e-97 358.6 230 87.0
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.5e-97 358.6 229 88.2
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 3.5e-97 358.6 230 86.5
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 4.6e-97 358.2 230 86.5
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 7.9e-97 357.5 230 87.0
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.0e-96 357.1 229 86.9
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.3e-96 356.7 230 85.7
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.3e-96 356.7 230 87.0
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.8e-96 356.3 228 86.8
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 6.7e-96 354.4 230 86.1
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.1e-95 353.6 230 85.2
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.9e-95 352.8 231 84.8
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.5e-95 352.4 230 84.3
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.3e-95 351.7 229 84.7
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.7e-95 351.3 236 83.9
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 7.4e-95 350.9 230 84.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 9.7e-95 350.5 229 85.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.6e-94 349.7 230 85.2
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.3e-94 347.8 230 84.8
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 8.2e-94 347.4 214 90.2
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.4e-93 345.9 252 77.8
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 2.6e-92 342.4 228 83.3
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.0e-91 340.5 231 82.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 5.0e-91 338.2 274 73.0
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.5e-91 337.4 275 72.0
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.4e-90 336.7 229 82.5
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.9e-90 336.3 214 86.9
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 2.5e-90 335.9 230 82.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.5e-90 335.9 214 86.9
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 3.2e-90 335.5 230 81.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 7.2e-90 334.3 230 77.8
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.2e-89 333.6 231 81.4
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.7e-89 332.4 271 72.7
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 7.9e-89 330.9 271 72.3
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 7.9e-89 330.9 225 82.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.8e-88 329.7 231 79.7
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.3e-88 329.3 228 81.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 8.8e-88 327.4 216 84.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.5e-87 326.6 252 71.0
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.5e-87 326.6 230 80.9
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.7e-87 324.7 227 74.9
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.7e-87 324.7 227 82.4
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.7e-86 323.2 271 66.1
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.7e-86 323.2 223 82.5
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-85 320.5 231 79.2
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.5e-83 311.2 229 76.9
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 5.5e-82 308.1 216 83.8
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 9.4e-82 307.4 215 80.5
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.6e-81 305.4 222 73.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.6e-81 305.4 308 57.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 6.1e-81 304.7 215 79.1
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-80 303.1 229 76.4
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-80 303.1 229 76.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.9e-80 302.0 230 75.7
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 6.7e-80 301.2 227 75.8
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.7e-78 295.4 223 71.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 3.8e-75 285.4 229 63.8
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 7.2e-74 281.2 231 69.7
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.7e-73 278.5 225 73.3
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-72 275.0 225 72.9
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 8.8e-72 274.2 175 88.0
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 3.3e-71 272.3 236 67.4
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 4.8e-70 268.5 175 86.9
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 6.3e-70 268.1 242 63.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 7.0e-69 264.6 238 65.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 7.2e-66 254.6 226 61.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 3.7e-62 242.3 174 78.7
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.8e-56 221.5 138 84.1
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 5.9e-52 208.4 132 82.6
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.0e-48 197.6 227 49.3
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 5.2e-48 195.3 133 85.7
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.9e-46 188.7 155 74.2
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-43 180.6 233 48.9
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.5e-42 177.2 287 43.6
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.5e-42 177.2 108 80.6
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.1e-41 173.3 97 90.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.6e-41 172.6 106 83.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.6e-39 166.4 90 93.3
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 3.0e-35 152.9 84 92.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.9e-34 150.2 155 61.3
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.9e-30 136.3 82 81.7
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.6e-28 130.6 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.6e-28 130.6 74 89.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.3e-27 127.5 80 78.8
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.6e-20 104.0 158 46.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.3e-19 100.9 158 43.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.6e-19 98.2 71 90.1
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-18 97.4 123 52.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.5e-18 97.4 176 38.1
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.6e-17 94.0 150 38.7
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-17 93.2 71 83.1
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 4.7e-17 92.4 55 78.2
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 6.2e-17 92.0 57 77.2
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.1e-17 91.7 160 40.0
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.4e-16 90.1 157 42.0
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-13 81.3 179 32.4
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.4e-13 80.9 46 84.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.2e-13 79.7 70 65.7
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 4.2e-13 79.3 217 34.1
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.7e-12 76.6 46 82.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.8e-12 75.1 157 38.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.1e-11 72.4 163 35.6
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 5.6e-10 68.9 43 76.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 7.3e-10 68.6 191 35.6
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.0e-08 61.6 140 40.7


User provided reference genes

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