Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 2.6e-68 261.9 134 100.0
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 1.6e-60 236.1 134 91.8
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 3.1e-53 211.8 134 83.6
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 5.0e-43 177.9 124 75.8
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 3.3e-34 148.7 97 75.3
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 3.3e-34 148.7 97 75.3
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 3.3e-34 148.7 119 67.2
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 1.2e-33 146.7 108 68.5
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 1.0e-32 143.7 107 65.4
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 1.4e-32 143.3 136 57.4
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.8e-32 142.9 134 54.5
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 5.2e-32 141.4 91 74.7
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 6.8e-32 141.0 127 58.3
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 1.2e-31 140.2 117 63.2
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.2e-31 140.2 92 72.8
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 2.0e-31 139.4 115 60.9
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 2.6e-31 139.0 125 59.2
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 3.4e-31 138.7 135 57.0
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 3.4e-31 138.7 116 59.5
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 4.4e-31 138.3 138 60.9
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 7.5e-31 137.5 109 65.1
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 7.5e-31 137.5 109 65.1
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 7.5e-31 137.5 92 70.7
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 7.5e-31 137.5 115 60.0
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 9.8e-31 137.1 117 60.7
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 9.8e-31 137.1 93 69.9
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 1.3e-30 136.7 95 66.3
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 1.3e-30 136.7 75 81.3
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 1.7e-30 136.3 93 67.7
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 2.9e-30 135.6 115 60.0
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.9e-30 135.6 92 70.7
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 2.9e-30 135.6 93 68.8
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 3.7e-30 135.2 135 52.6
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 3.7e-30 135.2 135 52.6
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 3.7e-30 135.2 92 69.6
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 3.7e-30 135.2 96 69.8
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 4.9e-30 134.8 93 69.9
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 4.9e-30 134.8 112 61.6
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 8.3e-30 134.0 116 55.2
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 1.1e-29 133.7 134 51.5
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.1e-29 133.7 104 62.5
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.4e-29 133.3 77 77.9
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 1.4e-29 133.3 133 53.4
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.4e-29 133.3 97 66.0
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 1.9e-29 132.9 116 56.0
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 1.9e-29 132.9 116 56.0
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 1.9e-29 132.9 98 63.3
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 2.4e-29 132.5 98 62.2
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 2.4e-29 132.5 134 50.7
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 3.2e-29 132.1 93 68.8
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 4.1e-29 131.7 93 66.7
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 4.1e-29 131.7 126 53.2
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 4.1e-29 131.7 120 57.5
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 4.1e-29 131.7 98 62.2
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 4.1e-29 131.7 93 68.8
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 5.4e-29 131.3 93 63.4
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 5.4e-29 131.3 95 63.2
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 5.4e-29 131.3 96 63.5
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 7.0e-29 131.0 98 62.2
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 7.0e-29 131.0 114 58.8
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 7.0e-29 131.0 74 81.1
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 7.0e-29 131.0 98 63.3
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 9.2e-29 130.6 126 59.5
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 1.2e-28 130.2 95 65.3
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 1.2e-28 130.2 95 63.2
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 1.6e-28 129.8 116 55.2
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.6e-28 129.8 73 79.5
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 1.6e-28 129.8 134 53.0
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 2.0e-28 129.4 131 53.4
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 2.7e-28 129.0 102 63.7
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 2.7e-28 129.0 109 59.6
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 2.7e-28 129.0 92 64.1
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 3.5e-28 128.6 109 61.5
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 3.5e-28 128.6 110 60.0
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 4.6e-28 128.3 134 52.2
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 4.6e-28 128.3 95 65.3
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 6.0e-28 127.9 123 56.9
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 1.0e-27 127.1 95 68.4
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 1.3e-27 126.7 118 54.2
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 1.3e-27 126.7 107 59.8
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 1.3e-27 126.7 109 60.6
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 5.0e-27 124.8 95 62.1
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 5.0e-27 124.8 156 48.1
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 6.6e-27 124.4 107 57.9
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 6.6e-27 124.4 70 78.6
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 6.6e-27 124.4 93 63.4
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.5e-26 123.2 103 61.2
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 3.3e-26 122.1 118 58.5
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 5.6e-26 121.3 134 47.0
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 9.5e-26 120.6 92 66.3
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 1.2e-25 120.2 134 47.0
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 2.8e-25 119.0 102 59.8
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 6.8e-24 114.4 131 48.9
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 9.8e-23 110.5 102 54.9
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 6.4e-22 107.8 120 46.7
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 3.2e-21 105.5 103 54.4
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 3.2e-21 105.5 83 59.0
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 7.1e-21 104.4 95 53.7
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 9.2e-21 104.0 73 56.2
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 8.6e-19 97.4 56 75.0
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 2.5e-18 95.9 94 51.1
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 5.6e-18 94.7 96 56.2
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 2.8e-17 92.4 64 60.9
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 6.8e-16 87.8 70 51.4
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 8.9e-16 87.4 120 39.2
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.4e-13 80.1 78 57.7
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 1.6e-12 76.6 77 57.1
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 4.7e-09 65.1 39 71.8
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 4.0e-08 62.0 37 73.0
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 2.0e-07 59.7 32 81.2
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 2.0e-07 59.7 59 47.5
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 2.0e-07 59.7 60 46.7
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 9.9e-07 57.4 61 44.3
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 2.2e-06 56.2 42 61.9


User provided reference genes

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