Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 5.7e-231 803.9 406 100.0
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 5.7e-231 803.9 406 100.0
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 1.5e-191 672.9 444 81.5
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 1.7e-190 669.5 444 80.9
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 2.3e-187 659.1 444 80.2
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 5.0e-187 657.9 444 79.3
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 6.5e-187 657.5 444 78.6
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 2.5e-186 655.6 436 79.6
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 4.2e-186 654.8 444 78.4
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 7.2e-186 654.1 444 78.2
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 2.8e-185 652.1 444 78.6
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 3.6e-185 651.7 444 78.4
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 3.6e-185 651.7 444 78.4
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 4.7e-185 651.4 444 77.9
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 6.1e-185 651.0 444 78.4
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 1.0e-184 650.2 444 77.9
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 1.8e-184 649.4 442 78.5
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 2.3e-184 649.0 444 77.7
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 3.0e-184 648.7 444 77.9
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 4.0e-184 648.3 442 78.3
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 6.8e-184 647.5 444 77.9
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 2.6e-183 645.6 442 78.1
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 2.6e-183 645.6 442 78.1
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 2.6e-183 645.6 444 77.7
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 2.6e-183 645.6 442 77.8
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 4.4e-183 644.8 442 77.8
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 5.7e-183 644.4 444 77.7
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 9.8e-183 643.7 442 77.8
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 1.7e-182 642.9 442 77.4
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 2.2e-182 642.5 444 77.5
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 3.7e-182 641.7 442 76.9
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 3.7e-182 641.7 442 76.9
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 4.9e-182 641.3 444 77.0
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 6.3e-182 641.0 442 76.9
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 1.1e-181 640.2 442 77.4
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 4.1e-181 638.3 444 77.3
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 4.1e-181 638.3 456 74.6
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 5.4e-181 637.9 442 76.7
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 7.0e-181 637.5 442 76.5
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 1.6e-180 636.3 442 75.8
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 2.0e-180 636.0 442 76.5
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 7.8e-180 634.0 442 76.0
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 7.8e-180 634.0 442 76.9
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 1.0e-179 633.6 442 76.7
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 1.3e-179 633.3 442 76.0
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 1.3e-179 633.3 442 76.0
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 1.7e-179 632.9 442 75.8
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.7e-179 632.9 442 76.2
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 1.7e-179 632.9 442 75.8
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 1.7e-179 632.9 444 75.7
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 2.3e-179 632.5 445 75.7
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 2.3e-179 632.5 444 75.9
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.3e-179 632.5 444 75.9
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.3e-179 632.5 444 75.9
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 3.8e-179 631.7 442 76.5
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 6.6e-179 630.9 442 75.6
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 6.6e-179 630.9 442 76.2
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 8.6e-179 630.6 445 75.3
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.5e-178 629.8 442 76.0
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 1.5e-178 629.8 442 75.6
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 2.5e-178 629.0 442 75.6
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 2.5e-178 629.0 442 75.3
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 3.3e-178 628.6 442 75.8
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 5.6e-178 627.9 442 75.3
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 7.3e-178 627.5 441 76.2
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 7.3e-178 627.5 441 76.2
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 7.3e-178 627.5 442 75.6
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 1.6e-177 626.3 442 75.8
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 1.6e-177 626.3 442 75.3
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 1.6e-177 626.3 442 75.3
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 3.6e-177 625.2 445 74.2
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 6.1e-177 624.4 442 74.7
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 8.0e-177 624.0 442 74.7
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 1.0e-176 623.6 442 75.1
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.4e-176 623.2 442 75.1
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 1.8e-176 622.9 442 75.3
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 5.2e-176 621.3 442 74.7
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 6.8e-176 620.9 442 74.2
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 6.8e-176 620.9 442 74.2
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 8.9e-176 620.5 441 75.5
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 8.9e-176 620.5 450 73.6
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 2.0e-175 619.4 442 73.8
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 3.4e-175 618.6 441 75.5
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 7.5e-175 617.5 442 74.0
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 7.5e-175 617.5 442 74.0
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 2.2e-174 615.9 442 74.7
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 2.2e-174 615.9 442 74.9
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 2.9e-174 615.5 442 74.2
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 3.7e-174 615.1 442 73.5
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 3.7e-174 615.1 442 74.4
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 6.4e-174 614.4 445 73.5
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.1e-173 613.6 442 73.1
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 1.4e-173 613.2 442 73.5
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 1.4e-173 613.2 442 73.3
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 3.2e-173 612.1 442 72.9
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 5.4e-173 611.3 442 72.6
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 1.0e-171 607.1 442 73.3
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 2.5e-170 602.4 442 71.9
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.6e-169 599.7 442 72.2
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 2.8e-169 599.0 442 71.7
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 3.6e-169 598.6 442 72.4
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 1.1e-168 597.0 478 68.8
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.4e-168 596.7 442 71.9
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.4e-168 596.7 481 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 2.3e-168 595.9 445 71.7
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 5.2e-168 594.7 423 74.0
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 4.4e-167 591.7 415 77.6
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 4.4e-167 591.7 442 71.0
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 1.3e-166 590.1 517 63.6
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 1.7e-166 589.7 444 70.5
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 2.2e-166 589.3 442 71.0
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 2.9e-166 589.0 447 72.0
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 1.1e-165 587.0 442 70.8
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 1.4e-165 586.6 443 70.7
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 2.4e-165 585.9 442 70.8
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 2.4e-165 585.9 442 70.8
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 2.4e-165 585.9 407 75.7
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 3.2e-165 585.5 442 70.1
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 5.4e-165 584.7 442 70.4
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 9.2e-165 583.9 442 70.6
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 1.6e-164 583.2 412 75.7
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 2.0e-164 582.8 442 70.1
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 2.0e-164 582.8 442 70.4
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 2.0e-164 582.8 442 70.4
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 4.6e-164 581.6 442 69.9
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 4.6e-164 581.6 442 70.1
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 1.3e-163 580.1 442 70.1
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 2.3e-163 579.3 442 69.9
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 3.0e-163 578.9 441 71.7
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 2.5e-162 575.9 441 68.9
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.6e-161 573.2 387 78.3
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 1.8e-160 569.7 442 69.7
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 1.8e-160 569.7 403 74.4
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 1.2e-159 567.0 444 68.5
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 4.4e-159 565.1 442 69.9
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 7.3e-154 547.7 406 73.9
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 3.1e-152 542.3 436 68.1
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 1.3e-147 526.9 439 66.5
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 5.6e-146 521.5 444 64.0
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 9.9e-143 510.8 404 69.3
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 2.7e-140 502.7 366 74.6
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 4.6e-140 501.9 396 69.7
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 3.9e-139 498.8 376 72.6
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 5.1e-139 498.4 381 70.6
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.3e-137 493.8 301 85.0
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 3.1e-128 462.6 444 55.4
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 1.3e-121 440.7 436 56.4
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 4.1e-112 409.1 442 52.5
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 7.7e-111 404.8 411 54.5
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 6.1e-108 395.2 281 74.0
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 6.3e-105 385.2 215 89.8
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 5.9e-103 378.6 217 87.6
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 3.1e-96 356.3 363 57.6
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 2.1e-92 343.6 239 74.9
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.7e-92 342.4 281 66.5
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 2.2e-89 333.6 231 77.5
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 1.0e-86 324.7 238 71.8
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.7e-84 315.8 179 87.2
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 3.8e-78 296.2 421 39.7
CDE04G0576 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 5.7e-74 282.3 242 64.5
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 1.1e-72 278.1 151 90.1
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 6.8e-67 258.8 411 42.1
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 1.0e-62 245.0 132 88.6
Oeu027218.1 Olea europaea HOM05D003843 ORTHO05D004646 1.3e-62 244.6 165 78.2
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 6.1e-60 235.7 322 46.9
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 1.1e-53 214.9 151 76.2
FAN22G0723 Fragaria x ananassa HOM05D003843 ORTHO05D004646 7.3e-53 212.2 115 91.3
Psat7g060600 Pisum sativum HOM05D003843 ORTHO05D004646 8.0e-52 208.8 149 75.2
MBI13_g30274_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 7.0e-48 195.7 105 92.4
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 3.2e-40 170.2 384 32.6
CsaV3_4G017300 Cucumis sativus L. HOM05D000055 ORTHO05D000057 1.2e-34 151.8 77 100.0
EL10Ac1g01679 Beta vulgaris HOM05D003843 ORTHO05D004646 7.1e-32 142.5 76 92.1
Sopen11g024640 Solanum pennellii HOM05D003843 ORTHO05D004646 4.9e-25 119.8 67 86.6
FAN25G1295 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.4e-16 90.9 116 50.9
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 7.1e-16 89.4 67 76.1
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 1.0e-14 85.5 306 27.1
SHI24968 Sapria himalayana HOM05D003843 ORTHO05D004646 1.3e-12 78.6 56 75.0
Lsat_1_v5_gn_4_91020 Lactuca sativa HOM05D000919 ORTHO05D001187 7.6e-10 69.3 40 80.0
Nitab4.5_0000062g0380 Nicotiana tabacum HOM05D003843 ORTHO05D284225 7.1e-08 62.8 37 83.8
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 9.3e-08 62.4 50 54.0
Cc00_g15040 Coffea canephora HOM05D003843 ORTHO05D004646 6.0e-07 59.7 54 63.0


User provided reference genes

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