Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 7.7e-39 163.3 81 100.0
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 2.5e-29 131.7 71 95.8
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 7.3e-29 130.2 71 94.4
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 3.2e-24 114.8 70 85.7
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 7.0e-24 113.6 65 86.2
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.6e-23 112.5 70 81.4
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 4.6e-23 110.9 70 77.1
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 5.9e-23 110.5 70 80.0
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 7.8e-23 110.2 71 77.5
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 1.0e-22 109.8 69 84.1
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 1.0e-22 109.8 67 83.6
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 1.0e-22 109.8 67 80.6
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 1.3e-22 109.4 65 81.5
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 1.7e-22 109.0 70 78.6
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 3.9e-22 107.8 66 83.3
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 3.9e-22 107.8 63 85.7
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 3.9e-22 107.8 55 94.5
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 5.0e-22 107.5 67 80.6
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 5.0e-22 107.5 62 83.9
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 5.0e-22 107.5 65 81.5
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 5.0e-22 107.5 66 83.3
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 5.0e-22 107.5 67 79.1
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 5.0e-22 107.5 59 86.4
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 8.6e-22 106.7 63 84.1
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 1.5e-21 105.9 70 80.0
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 1.5e-21 105.9 68 76.5
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.9e-21 105.5 66 78.8
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.9e-21 105.5 66 78.8
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.9e-21 105.5 66 78.8
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.9e-21 105.5 66 78.8
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 1.9e-21 105.5 67 77.6
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 1.9e-21 105.5 67 77.6
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 2.5e-21 105.1 62 85.5
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 3.3e-21 104.8 67 79.1
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 3.3e-21 104.8 54 94.4
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 3.3e-21 104.8 62 80.6
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 3.3e-21 104.8 66 81.8
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 3.3e-21 104.8 68 75.0
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 4.3e-21 104.4 62 82.3
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 4.3e-21 104.4 66 81.8
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 4.3e-21 104.4 57 87.7
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 5.6e-21 104.0 72 75.0
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 5.6e-21 104.0 69 76.8
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 5.6e-21 104.0 66 77.3
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 7.3e-21 103.6 69 75.4
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 7.3e-21 103.6 56 89.3
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 7.3e-21 103.6 66 77.3
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 7.3e-21 103.6 57 87.7
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 7.3e-21 103.6 63 82.5
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 9.5e-21 103.2 54 92.6
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 9.5e-21 103.2 65 80.0
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 9.5e-21 103.2 55 87.3
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 9.5e-21 103.2 71 76.1
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 9.5e-21 103.2 69 75.4
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 9.5e-21 103.2 54 92.6
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 9.5e-21 103.2 54 92.6
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 9.5e-21 103.2 54 92.6
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 9.5e-21 103.2 66 80.3
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 1.6e-20 102.4 71 74.6
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 1.6e-20 102.4 71 74.6
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 1.6e-20 102.4 71 74.6
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.6e-20 102.4 68 76.5
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.6e-20 102.4 64 82.8
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.6e-20 102.4 66 78.8
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 1.6e-20 102.4 54 92.6
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 2.1e-20 102.1 67 74.6
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 2.1e-20 102.1 57 84.2
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 2.1e-20 102.1 65 75.4
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 2.1e-20 102.1 55 89.1
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 2.1e-20 102.1 62 82.3
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 2.8e-20 101.7 71 77.5
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 2.8e-20 101.7 57 86.0
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 2.8e-20 101.7 70 72.9
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 3.6e-20 101.3 57 84.2
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 3.6e-20 101.3 63 79.4
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 3.6e-20 101.3 61 82.0
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 4.7e-20 100.9 66 75.8
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 4.7e-20 100.9 66 75.8
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 4.7e-20 100.9 69 73.9
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 4.7e-20 100.9 57 87.7
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 6.2e-20 100.5 55 87.3
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 6.2e-20 100.5 69 73.9
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 6.2e-20 100.5 62 80.6
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 8.0e-20 100.1 71 73.2
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 8.0e-20 100.1 54 88.9
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 1.1e-19 99.8 65 73.8
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 1.4e-19 99.4 64 76.6
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 1.4e-19 99.4 57 84.2
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 1.4e-19 99.4 57 82.5
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.8e-19 99.0 68 75.0
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 1.8e-19 99.0 57 82.5
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 1.8e-19 99.0 57 84.2
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 1.8e-19 99.0 57 82.5
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 1.8e-19 99.0 55 85.5
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 3.1e-19 98.2 63 74.6
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 3.1e-19 98.2 64 76.6
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 3.1e-19 98.2 62 79.0
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 4.0e-19 97.8 57 84.2
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 4.0e-19 97.8 57 84.2
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 6.8e-19 97.1 69 73.9
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 6.8e-19 97.1 63 73.0
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 8.9e-19 96.7 54 87.0
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 8.9e-19 96.7 52 90.4
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 1.2e-18 96.3 56 80.4
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 1.2e-18 96.3 54 87.0
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 1.2e-18 96.3 54 87.0
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 1.5e-18 95.9 63 71.4
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 1.5e-18 95.9 51 84.3
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 2.0e-18 95.5 57 80.7
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 5.8e-18 94.0 51 84.3
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 9.8e-18 93.2 51 84.3
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 2.2e-17 92.0 48 87.5
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 1.4e-16 89.4 57 77.2
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 3.2e-16 88.2 51 76.5
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.1e-16 87.8 65 69.2
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.1e-16 87.8 65 69.2
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.1e-16 87.8 65 69.2
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 1.6e-15 85.9 51 76.5
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.5e-13 79.3 43 86.0
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 1.6e-12 75.9 64 60.9
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 4.0e-11 71.2 37 89.2
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 5.8e-10 67.4 45 77.8


User provided reference genes

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