Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.3e-98 363.2 201 100.0
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.0e-87 327.0 226 81.4
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 3.2e-78 295.4 192 89.1
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 3.0e-76 288.9 191 82.2
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.8e-66 255.8 201 66.2
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 8.3e-66 254.2 206 67.0
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.8e-65 253.1 197 67.5
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.4e-65 251.5 201 67.7
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 7.0e-65 251.1 169 73.4
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 2.7e-64 249.2 201 67.2
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 3.5e-64 248.8 176 69.9
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 3.5e-64 248.8 198 66.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 5.9e-64 248.1 173 72.8
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 7.7e-64 247.7 191 66.5
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.0e-63 247.3 198 65.7
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 3.8e-63 245.4 206 66.0
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.6e-63 244.2 201 67.2
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.6e-63 244.2 173 69.9
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.5e-62 242.7 187 69.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 4.2e-62 241.9 172 70.9
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 7.2e-62 241.1 166 73.5
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.6e-61 240.0 173 70.5
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.1e-61 239.6 172 71.5
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.1e-61 239.6 159 81.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 4.7e-61 238.4 206 62.1
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.8e-60 236.5 206 63.1
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.3e-60 236.1 176 68.8
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.0e-60 235.7 198 63.6
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.0e-60 235.7 159 74.2
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.0e-60 235.7 166 69.3
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.0e-60 235.3 173 68.8
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 8.9e-60 234.2 201 61.7
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 8.9e-60 234.2 197 58.9
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 8.9e-60 234.2 176 67.0
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.2e-59 233.8 174 66.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.2e-59 233.8 173 70.5
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.5e-59 233.4 176 68.8
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.5e-59 233.4 176 64.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.5e-59 233.4 179 69.3
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.6e-59 232.6 201 61.7
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.6e-59 232.6 196 60.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.4e-59 232.3 166 70.5
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 5.7e-59 231.5 176 67.6
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 5.7e-59 231.5 171 67.8
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.7e-59 231.5 170 69.4
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 5.7e-59 231.5 178 67.4
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 7.5e-59 231.1 172 66.3
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 9.8e-59 230.7 175 65.1
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 9.8e-59 230.7 196 60.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.3e-58 230.3 175 66.3
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.3e-58 230.3 173 67.6
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.7e-58 229.9 173 69.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.2e-58 229.6 197 59.4
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.2e-58 229.6 173 69.9
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.2e-58 229.6 176 66.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.8e-58 229.2 164 68.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.8e-58 229.2 168 69.0
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.7e-58 228.8 203 61.1
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.7e-58 228.8 192 62.5
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 3.7e-58 228.8 170 65.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 4.9e-58 228.4 201 61.2
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 6.3e-58 228.0 168 70.2
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 6.3e-58 228.0 173 68.2
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 6.3e-58 228.0 203 61.1
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 6.3e-58 228.0 150 73.3
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 6.3e-58 228.0 171 65.5
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 8.3e-58 227.6 169 66.9
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 8.3e-58 227.6 176 65.9
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.1e-57 227.3 164 67.7
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.8e-57 226.5 172 67.4
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.8e-57 226.5 167 65.9
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 4.1e-57 225.3 199 58.8
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.4e-57 224.9 198 60.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.2e-56 223.8 180 64.4
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.2e-56 223.8 180 64.4
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.2e-56 223.8 164 65.2
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.2e-56 223.8 173 66.5
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.2e-56 223.8 172 66.9
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.2e-56 223.8 175 66.3
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.7e-56 222.6 160 69.4
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 7.8e-56 221.1 200 61.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 7.8e-56 221.1 177 63.8
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.3e-55 220.3 160 70.0
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.3e-55 220.3 160 70.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.3e-55 219.5 197 61.4
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.3e-55 219.5 198 59.1
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.3e-55 219.5 198 59.1
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 3.8e-55 218.8 173 64.7
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 3.8e-55 218.8 173 64.7
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 3.8e-55 218.8 198 58.6
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 5.0e-55 218.4 173 64.7
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 5.0e-55 218.4 173 64.7
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 5.0e-55 218.4 201 58.7
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 6.6e-55 218.0 166 65.7
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-54 217.2 176 63.1
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.1e-54 217.2 182 62.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-54 217.2 176 63.6
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.5e-54 216.9 170 65.3
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 2.5e-54 216.1 182 62.1
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.5e-54 214.2 175 61.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.2e-53 213.8 157 67.5
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.6e-53 213.4 157 66.9
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.8e-53 212.6 183 62.3
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.7e-53 211.8 173 64.2
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.0e-52 210.7 183 60.1
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.8e-52 209.9 182 61.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.8e-52 209.9 172 62.8
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.8e-52 209.9 171 60.8
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.3e-52 209.5 169 65.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 3.1e-52 209.1 181 59.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.0e-52 208.8 179 61.5
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 4.0e-52 208.8 174 61.5
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 5.2e-52 208.4 176 60.8
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.8e-52 208.0 167 62.3
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.4e-51 205.7 198 57.1
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.2e-50 203.0 199 58.3
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.2e-48 197.2 165 61.8
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.6e-48 195.3 188 55.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.0e-48 194.9 174 58.0
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.3e-47 193.7 208 51.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 3.9e-47 192.2 170 60.0
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.9e-47 192.2 141 68.1
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.0e-43 179.9 163 55.2
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 2.6e-43 179.5 159 54.1
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.4e-42 174.9 169 53.3
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 8.3e-42 174.5 166 59.0
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 8.3e-42 174.5 172 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 2.7e-40 169.5 163 55.2
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.6e-35 152.9 200 46.5
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.2e-33 146.0 165 46.7
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.0e-32 141.7 173 45.1
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.9e-31 139.0 115 67.0
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-30 137.5 125 56.8
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.3e-30 136.0 97 70.1
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 4.3e-30 135.6 139 51.1
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.6e-29 133.7 166 45.2
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.8e-29 132.9 93 68.8
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 4.7e-29 132.1 93 72.0
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 8.1e-29 131.3 100 65.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.4e-28 130.6 98 69.4
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.8e-27 125.2 84 71.4
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-25 120.6 83 69.9
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 9.6e-22 107.8 81 69.1
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 4.7e-21 105.5 103 56.3
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 8.1e-21 104.8 85 63.5
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.9e-14 83.6 72 58.3
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.6e-14 82.0 79 50.6
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.8e-13 79.7 136 39.0
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.8e-13 79.7 136 33.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 3.6e-13 79.3 60 68.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 4.5e-11 72.4 75 52.0
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.9e-07 59.3 46 60.9
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.1e-07 58.9 44 59.1
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 3.3e-06 56.2 60 53.3
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.3e-06 55.8 96 37.5


User provided reference genes

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