Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 9.7e-253 876.3 437 100.0
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 8.5e-249 863.2 437 98.6
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 1.2e-226 789.6 437 89.9
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.3e-220 769.6 437 89.9
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.9e-187 659.4 437 72.5
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 6.0e-186 654.4 436 74.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 6.6e-185 651.0 437 73.0
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 5.6e-184 647.9 436 73.2
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 6.2e-183 644.4 436 72.7
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 3.1e-182 642.1 437 71.9
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.5e-181 639.8 434 72.1
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 5.8e-181 637.9 432 72.2
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 7.5e-181 637.5 432 72.9
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 9.9e-181 637.1 430 73.0
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.3e-180 636.7 437 70.3
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.7e-180 636.3 436 70.6
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.7e-180 636.3 436 72.5
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.2e-180 636.0 432 72.0
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.2e-180 636.0 431 72.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 4.9e-180 634.8 431 71.9
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 6.4e-180 634.4 432 71.8
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.1e-179 633.6 432 71.8
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.4e-179 632.5 436 71.3
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.1e-178 629.4 432 71.5
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 3.5e-178 628.6 431 71.5
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 3.5e-178 628.6 430 71.6
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.5e-178 628.6 432 71.8
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 3.5e-178 628.6 432 72.0
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 6.0e-178 627.9 436 70.9
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.3e-177 626.7 436 70.0
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.7e-177 626.3 437 71.9
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.3e-177 625.9 437 72.5
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 3.0e-177 625.5 436 70.6
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 3.9e-177 625.2 429 71.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.9e-177 625.2 430 71.6
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 8.6e-177 624.0 438 70.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 8.6e-177 624.0 430 71.2
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.3e-176 621.7 436 70.2
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 8.1e-175 617.5 436 69.5
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 9.9e-173 610.5 432 70.4
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 3.8e-172 608.6 432 68.3
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 8.4e-172 607.4 434 68.7
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.9e-171 606.3 431 69.1
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 2.4e-171 605.9 438 69.2
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.2e-170 603.6 430 68.4
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.6e-170 603.2 438 68.9
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.6e-170 603.2 437 68.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 2.7e-170 602.4 430 68.6
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.0e-169 600.5 430 68.6
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.0e-169 600.5 437 68.6
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.3e-169 600.1 430 68.8
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.3e-169 600.1 449 66.4
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.7e-169 599.7 430 68.4
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 3.9e-169 598.6 430 68.6
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 8.7e-169 597.4 430 67.9
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 8.7e-169 597.4 437 68.4
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 1.9e-168 596.3 430 68.1
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.1e-167 592.8 434 68.7
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 4.7e-167 591.7 474 63.9
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 6.9e-166 587.8 462 65.6
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.2e-165 587.0 429 67.8
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 2.6e-165 585.9 430 66.3
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 7.6e-165 584.3 416 68.3
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 9.9e-165 583.9 431 68.2
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.3e-164 583.6 432 67.6
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.9e-164 582.4 436 66.3
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.9e-164 582.4 432 66.7
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 8.4e-164 580.9 433 67.4
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 8.4e-164 580.9 441 67.1
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 9.3e-163 577.4 472 62.5
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 1.2e-162 577.0 522 57.3
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.7e-162 575.9 432 66.2
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 3.5e-162 575.5 474 61.6
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.3e-161 573.5 416 67.5
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 3.0e-161 572.4 429 64.3
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 2.8e-159 565.8 473 61.5
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.8e-159 565.8 426 65.0
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.1e-158 563.9 517 57.6
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 4.0e-158 562.0 440 64.1
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.6e-157 559.3 435 63.4
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 6.7e-153 544.7 430 65.3
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.5e-152 543.5 375 72.5
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 3.3e-152 542.3 430 65.1
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 2.8e-151 539.3 433 61.4
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 3.7e-151 538.9 436 63.8
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.0e-148 530.8 436 62.4
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.2e-148 529.6 439 62.6
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.6e-146 523.5 728 43.0
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 2.3e-145 519.6 421 63.4
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 2.3e-145 519.6 446 58.7
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.9e-144 516.5 376 68.1
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.3e-143 513.8 454 60.6
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-143 513.8 425 62.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 4.8e-143 511.9 362 70.7
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 4.2e-139 498.8 378 66.7
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.6e-138 496.9 378 66.4
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 8.7e-137 491.1 377 65.3
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.3e-135 487.3 362 68.5
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 9.7e-128 461.1 430 57.2
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 8.2e-127 458.0 434 53.7
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 2.9e-124 449.5 698 40.4
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 4.5e-117 425.6 298 70.5
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.7e-116 423.7 431 49.4
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 2.2e-116 423.3 432 49.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 6.5e-116 421.8 339 63.4
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.0e-113 414.5 319 65.2
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 8.2e-111 404.8 341 60.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 5.9e-109 398.7 295 67.8
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 5.7e-104 382.1 437 46.5
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 9.4e-99 364.8 350 53.4
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.4e-86 324.3 220 75.9
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.8e-81 307.4 249 64.7
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.9e-78 297.4 219 67.6
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 2.4e-70 270.4 235 63.4
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.2e-64 251.5 161 77.0
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 2.0e-64 250.8 283 51.9
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 3.4e-64 250.0 429 35.7
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.6e-61 241.1 215 61.9
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.2e-56 224.9 137 79.6
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.8e-55 219.9 159 69.2
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 6.4e-55 219.2 439 34.9
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.3e-51 206.5 133 75.2
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 8.4e-47 192.2 142 65.5
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.1e-42 177.6 140 62.1
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.9e-38 164.5 318 32.1
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.6e-37 161.4 200 48.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 4.6e-37 159.8 193 48.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.0e-37 159.5 149 49.7
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 4.2e-22 110.2 146 47.3
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.0e-20 105.5 120 47.5
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 3.0e-20 104.0 97 51.5
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 1.6e-18 98.2 53 75.5
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.1e-14 85.5 69 60.9
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.4e-14 85.1 75 58.7
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.6e-13 81.6 78 47.4
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.7e-13 80.9 75 56.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 5.1e-12 76.6 85 40.0
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 2.8e-10 70.9 41 85.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 4.8e-10 70.1 52 67.3
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 8.5e-07 59.3 45 64.4
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 8.5e-07 59.3 39 74.4
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.1e-06 58.9 41 58.5


User provided reference genes

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