Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G013300 Cucumis sativus L. HOM05D003255 ORTHO05D003705 3.8e-182 641.3 315 100.0
MELO3C008799.2 Cucumis melo HOM05D003255 ORTHO05D003705 3.3e-154 548.5 310 87.4
ClCG04G005290 Citrullus lanatus HOM05D003255 ORTHO05D003705 3.1e-144 515.4 315 82.2
Sed0011624 Sechium edule HOM05D003255 ORTHO05D003705 9.5e-117 424.1 316 68.0
Haze_19413 Corylus avellana HOM05D003255 ORTHO05D003705 1.7e-86 323.6 292 59.2
QL07p019728 Quercus lobata HOM05D003255 ORTHO05D003705 1.5e-85 320.5 330 53.9
QL07p020062 Quercus lobata HOM05D003255 ORTHO05D003705 1.5e-85 320.5 330 53.9
Gohir.A11G258700 Gossypium hirsutum HOM05D003255 ORTHO05D003705 9.9e-82 307.8 277 58.1
Gohir.D11G268800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.7e-81 307.0 276 58.0
Ca_21767_v3 Cicer arietinum L. HOM05D000813 ORTHO05D004282 3.8e-81 305.8 286 52.8
Gorai.007G288600 Gossypium raimondii HOM05D003255 ORTHO05D003705 4.9e-81 305.4 276 57.6
CiPaw.10G000700 Carya illinoinensis HOM05D003255 ORTHO05D003705 9.2e-80 301.2 307 53.1
Thecc.05G293800 Theobroma cacao HOM05D003255 ORTHO05D003705 1.2e-79 300.8 318 53.8
Duzib128G0833 Durio zibethinus HOM05D003255 ORTHO05D003705 1.3e-78 297.4 304 52.0
Dinv14583 Davidia involucrata HOM05D003255 ORTHO05D003705 3.9e-78 295.8 326 52.1
Manes.09G142000 Manihot esculenta HOM05D003255 ORTHO05D003705 4.3e-77 292.4 325 51.4
CANSAT56G4486 Cannabis sativa HOM05D003255 ORTHO05D003705 7.3e-77 291.6 286 52.4
Rhsim03G0001300 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.2e-76 290.8 334 50.3
DCAR_013690 Daucus carota HOM05D003255 ORTHO05D003705 2.8e-76 289.7 304 53.0
Prupe.7G003600 Prunus persica HOM05D003255 ORTHO05D003705 3.6e-76 289.3 299 54.2
Lj2g0018565 Lotus japonicus HOM05D003255 ORTHO05D003705 1.1e-75 287.7 287 53.3
Medtr6g032880 Medicago truncatula HOM05D003255 ORTHO05D003705 1.4e-75 287.3 314 50.3
Psat0s2522g0120 Pisum sativum HOM05D003255 ORTHO05D003705 2.4e-75 286.6 286 50.3
Potri.019G034000 Populus trichocarpa HOM05D003255 ORTHO05D003705 9.0e-75 284.6 331 47.1
TAR623G0562 Trochodendron aralioides HOM05D003255 ORTHO05D003705 9.0e-75 284.6 332 49.1
PGSC0003DMG400008640 Solanum tuberosum HOM05D003255 ORTHO05D003705 1.5e-74 283.9 306 49.0
Nitab4.5_0002825g0020 Nicotiana tabacum HOM05D003255 ORTHO05D003705 2.6e-74 283.1 283 51.6
Sabra19G0041900 Salix brachista HOM05D003255 ORTHO05D003705 2.6e-74 283.1 324 48.5
Cpa.g.sc51.108 Carica papaya HOM05D003255 ORTHO05D003705 9.9e-74 281.2 302 51.0
Peaxi162Scf00076g01038 Petunia axillaris HOM05D003255 ORTHO05D003705 9.9e-74 281.2 290 49.7
Solyc03g062710.4 Solanum lycopersicum HOM05D003255 ORTHO05D003705 9.9e-74 281.2 306 48.4
Glyma.16G153000 Glycine max HOM05D003255 ORTHO05D003705 2.9e-73 279.6 311 47.3
Actinidia30556 Actinidia chinensis HOM05D003255 ORTHO05D003705 4.9e-73 278.9 317 49.2
CAN.G317.14 Capsicum annuum HOM05D003255 ORTHO05D003705 8.4e-73 278.1 330 46.7
Ciclev10020539m.g Citrus clementina HOM05D003255 ORTHO05D003705 8.4e-73 278.1 283 53.0
TPR.G34627 Trifolium pratense HOM05D003255 ORTHO05D003705 1.1e-72 277.7 327 47.7
vmacro12570 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 1.4e-72 277.3 310 51.3
Sopen03g015020 Solanum pennellii HOM05D003255 ORTHO05D003705 2.4e-72 276.6 319 47.0
TWI60G0442 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 3.2e-72 276.2 291 50.2
Nitab4.5_0000001g0080 Nicotiana tabacum HOM05D003255 ORTHO05D003705 2.1e-71 273.5 307 47.9
VMungo0464G0063 Vigna mungo HOM05D003255 ORTHO05D003705 2.7e-71 273.1 283 48.1
HanXRQChr13g0398041 Helianthus annuus HOM05D003255 ORTHO05D003705 1.7e-70 270.4 307 48.2
MD14G1002400 Malus domestica HOM05D003255 ORTHO05D003705 6.6e-70 268.5 298 50.0
Lalb_Chr06g0173971 Lupinus albus HOM05D003255 ORTHO05D003705 2.5e-69 266.5 317 46.1
Lj2C357T24 Lonicera japonica HOM05D003255 ORTHO05D003705 5.6e-69 265.4 301 49.5
FvH4_1g28070 Fragaria vesca HOM05D003255 ORTHO05D003705 2.8e-68 263.1 285 52.3
FAN19G2054 Fragaria x ananassa HOM05D003255 ORTHO05D003705 2.8e-68 263.1 309 49.8
Phvul.004G079500 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 2.4e-67 260.0 274 47.8
Hma1.2p1_0376F.1_g139160 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 9.0e-67 258.1 337 45.7
Lsat_1_v5_gn_6_36901 Lactuca sativa HOM05D003255 ORTHO05D003705 4.5e-66 255.8 323 44.9
Oeu060006.1 Olea europaea HOM05D003255 ORTHO05D003705 4.9e-65 252.3 287 48.1
CSS0017996 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 6.4e-65 251.9 299 49.2
RcHm_v2.0_Chr3g0497181 Rosa chinensis HOM05D003255 ORTHO05D003705 8.4e-65 251.5 290 51.4
PGR142G1693 Punica granatum HOM05D003255 ORTHO05D003705 1.9e-64 250.4 328 45.1
Nn7g35823 Nelumbo nucifera HOM05D003255 ORTHO05D003705 2.4e-64 250.0 285 47.7
PSO339G1718 Papaver somniferum HOM05D003255 ORTHO05D003705 3.2e-64 249.6 330 43.6
ECA233G3001 Erigeron canadensis HOM05D000074 ORTHO05D000696 1.2e-63 247.7 286 47.2
AUR62032061 Chenopodium quinoa HOM05D003255 ORTHO05D003705 2.1e-63 246.9 314 46.5
Eucgr.K01496 Eucalyptus grandis HOM05D003255 ORTHO05D003705 1.3e-62 244.2 278 47.8
THA.LOC104816712 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 3.9e-62 242.7 268 45.9
THA.LOC104805764 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 8.7e-62 241.5 267 46.1
THA.LOC104807097 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 8.7e-62 241.5 267 46.1
Aqoxy2G00586 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 9.6e-61 238.0 280 46.8
EL10Ac3g06815 Beta vulgaris HOM05D003255 ORTHO05D003705 3.4e-58 229.6 326 43.6
MSTRG.19937 Avicennia marina HOM05D003255 ORTHO05D003705 4.9e-57 225.7 275 44.7
arahy.Tifrunner.gnm1.ann1.6P03AF Arachis hypogaea HOM05D003255 ORTHO05D003705 8.4e-57 224.9 281 45.2
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 1.6e-55 220.7 281 44.5
Actinidia22086 Actinidia chinensis HOM05D003255 ORTHO05D003705 1.8e-54 217.2 267 46.1
Cfa016436 Carpinus fangiana HOM05D003255 ORTHO05D003705 1.8e-54 217.2 210 56.2
Cc06_g22880 Coffea canephora HOM05D003255 ORTHO05D003705 1.8e-54 217.2 237 46.0
GSVIVG01033392001 Vitis vinifera HOM05D003255 ORTHO05D003705 1.8e-54 217.2 241 50.2
Atru.chr2.1364 Acer truncatum HOM05D003255 ORTHO05D003705 1.5e-53 214.2 237 50.6
Aa31LG10G1180 Aethionema arabicum HOM05D003255 ORTHO05D003705 1.9e-53 213.8 311 39.2
unitig_37.g12787 Utricularia gibba HOM05D003255 ORTHO05D003705 2.5e-53 213.4 305 40.7
FAN26G2862 Fragaria x ananassa HOM05D003255 ORTHO05D003705 4.0e-51 206.1 216 52.3
Ah.13g075320 Amaranthus hybridus HOM05D003255 ORTHO05D003705 6.9e-51 205.3 263 44.1
Zm00001eb057170 Zea mays HOM05D003255 ORTHO05D003705 4.5e-50 202.6 332 38.3
AUR62032686 Chenopodium quinoa HOM05D003255 ORTHO05D003705 7.6e-50 201.8 265 44.9
CARHR045040 Cardamine hirsuta HOM05D003255 ORTHO05D003705 6.5e-49 198.7 257 42.4
AL1G63430 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 1.4e-48 197.6 269 42.0
Thhalv10011597m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 1.4e-48 197.6 270 42.2
Carub.0001s4389 Capsella rubella HOM05D003255 ORTHO05D003705 1.9e-48 197.2 267 41.2
ATR0697G052 Amborella trichopoda HOM05D003255 ORTHO05D003705 5.5e-48 195.7 278 43.2
CDE02G4790 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 7.1e-48 195.3 258 42.2
Sp1g41050 Schrenkiella parvula HOM05D003255 ORTHO05D003705 1.2e-47 194.5 260 42.3
A06p00210 Brassica napus HOM05D003255 ORTHO05D003705 3.5e-47 193.0 259 43.6
BraA06t23237Z Brassica rapa HOM05D003255 ORTHO05D003705 3.5e-47 193.0 259 43.6
AT1G55370 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 5.1e-46 189.1 269 40.1
Haze_11188 Corylus avellana HOM05D003255 ORTHO05D003705 2.4e-43 180.3 159 58.5
Migut.J01893 Erythranthe guttata HOM05D003255 ORTHO05D003705 3.1e-43 179.9 282 40.8
Os03g0748300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 1.3e-41 174.5 274 37.6
Hma1.2p1_2695F.1_g327030 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 1.4e-40 171.0 249 38.6
Cfa008478 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.5e-40 169.1 212 47.2
BolC6t36111H Brassica oleracea HOM05D003255 ORTHO05D003705 4.3e-37 159.5 258 38.0
BcaC08g43621 Brassica carinata HOM05D003255 ORTHO05D003705 2.2e-36 157.1 258 37.6
C06p10350 Brassica napus HOM05D003255 ORTHO05D003705 2.2e-36 157.1 258 37.6
FAN23G0456 Fragaria x ananassa HOM05D003255 ORTHO05D003705 4.1e-35 152.9 146 54.8
Glyma.02G071800 Glycine max HOM05D003255 ORTHO05D003705 4.5e-34 149.4 182 42.3
Haze_11191 Corylus avellana HOM05D003255 ORTHO05D003705 2.5e-32 143.7 97 69.1
SEGI_06106 Sequoiadendron giganteum HOM05D003255 ORTHO05D003705 3.2e-32 143.3 264 34.1
Haze_11184 Corylus avellana HOM05D003255 ORTHO05D003705 1.2e-31 141.4 97 68.0
Rhsim09G0004800 Rhododendron simsii HOM05D003255 ORTHO05D003705 6.1e-31 139.0 103 68.0
Hund19240 Selenicereus undatus HOM05D003255 ORTHO05D003705 4.1e-27 126.3 144 47.9
Mapoly0135s0022 Marchantia polymorpha HOM05D003255 ORTHO05D003705 8.5e-25 118.6 287 30.7
FvH4_4g18560 Fragaria vesca HOM05D003255 ORTHO05D003705 4.2e-24 116.3 111 57.7
FAN12G2339 Fragaria x ananassa HOM05D003255 ORTHO05D003705 6.1e-23 112.5 111 56.8
COL.COLO4_13608 Corchorus olitorius HOM05D003255 ORTHO05D003705 2.6e-21 107.1 226 32.7
AagrBONN_evm.TU.Sc2ySwM_368.2197 Anthoceros agrestis HOM05D003255 ORTHO05D003705 9.1e-19 98.6 284 27.8
CDE05G3425 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 4.2e-16 89.7 248 27.8
FAN17G0654 Fragaria x ananassa HOM05D003255 ORTHO05D003705 2.3e-14 84.0 91 50.5
Gohir.D11G268900 Gossypium hirsutum HOM05D003255 ORTHO05D003705 4.0e-14 83.2 248 25.8
Pp3c25_5270 Physcomitrium patens HOM05D003255 ORTHO05D003705 4.4e-13 79.7 246 24.0
CARHR045100 Cardamine hirsuta HOM05D003255 ORTHO05D003705 1.3e-12 78.2 95 46.3
CDE01G0333 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 1.7e-12 77.8 172 30.8
AagrBONN_evm.TU.Sc2ySwM_368.2200 Anthoceros agrestis HOM05D003255 ORTHO05D003705 1.4e-11 74.7 177 29.9
SMO275G0062 Selaginella moellendorffii HOM05D003255 ORTHO05D003705 1.7e-09 67.8 249 25.7
TWI32G0868 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 2.2e-09 67.4 196 25.0
FAN17G0084 Fragaria x ananassa HOM05D003255 ORTHO05D003705 6.5e-09 65.9 44 68.2
Lsat_1_v5_gn_6_36921 Lactuca sativa HOM05D003255 ORTHO05D003705 8.5e-09 65.5 196 24.5


User provided reference genes

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