Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.0e-57 226.5 109 100.0
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 7.2e-56 220.3 109 97.2
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.6e-55 219.2 109 96.3
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 4.4e-53 211.1 109 92.7
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 8.2e-52 206.8 106 92.5
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.8e-51 205.7 106 91.5
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.5e-50 202.6 109 87.2
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 2.6e-50 201.8 107 86.9
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 4.5e-50 201.1 109 87.2
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.2e-49 198.7 109 85.3
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.9e-49 198.4 109 85.3
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.1e-48 196.4 106 86.8
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.9e-48 195.7 106 84.9
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 7.2e-48 193.7 106 84.0
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 4.7e-47 191.0 100 88.0
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 4.7e-47 191.0 99 87.9
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 6.1e-47 190.7 97 90.7
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 6.1e-47 190.7 100 88.0
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.3e-46 188.7 110 85.5
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.0e-46 188.3 100 87.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 5.2e-46 187.6 110 83.6
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 8.8e-46 186.8 109 81.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-45 186.4 101 86.1
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.5e-45 186.0 110 83.6
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 2.0e-45 185.7 105 81.9
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 7.4e-45 183.7 109 82.6
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 9.7e-45 183.3 111 82.9
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.7e-44 182.6 106 80.2
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 2.2e-44 182.2 106 82.1
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 4.8e-44 181.0 107 79.4
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 8.2e-44 180.3 105 80.0
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.1e-43 179.9 94 88.3
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.8e-43 179.1 100 81.0
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.8e-43 179.1 108 75.9
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.1e-43 178.3 110 80.9
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.3e-43 177.6 109 78.9
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.3e-43 177.6 109 78.9
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 5.3e-43 177.6 109 75.2
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.6e-42 176.0 105 79.0
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.6e-42 176.0 97 81.4
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.0e-42 175.6 94 87.2
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 2.6e-42 175.3 106 77.4
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.6e-42 175.3 104 78.8
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.6e-42 175.3 110 78.2
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.6e-42 175.3 110 78.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 3.5e-42 174.9 95 84.2
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 4.5e-42 174.5 94 85.1
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 5.9e-42 174.1 97 84.5
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 5.9e-42 174.1 100 78.0
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 7.7e-42 173.7 104 77.9
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 3.8e-41 171.4 109 78.0
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.8e-41 171.4 109 73.4
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 5.0e-41 171.0 97 79.4
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 6.5e-41 170.6 105 74.3
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.5e-41 170.6 103 78.6
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 8.5e-41 170.2 98 78.6
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.1e-40 169.9 97 79.4
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 1.5e-40 169.5 108 78.7
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.5e-40 169.5 109 76.1
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.5e-40 168.7 109 75.2
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.2e-40 168.3 99 75.8
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.2e-40 167.2 99 75.8
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 7.2e-40 167.2 103 75.7
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 7.2e-40 167.2 105 75.2
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 7.2e-40 167.2 103 75.7
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 7.2e-40 167.2 103 75.7
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 7.2e-40 167.2 91 82.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 9.4e-40 166.8 96 80.2
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 9.4e-40 166.8 99 78.8
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 9.4e-40 166.8 104 74.0
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 9.4e-40 166.8 94 81.9
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 9.4e-40 166.8 97 77.3
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-39 166.4 91 82.4
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.6e-39 166.0 95 81.1
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.6e-39 166.0 91 82.4
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.6e-39 166.0 103 74.8
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.6e-39 166.0 103 75.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.1e-39 165.6 103 75.7
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.1e-39 165.6 103 75.7
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.1e-39 165.6 91 81.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-39 165.6 96 80.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-39 165.6 96 80.2
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-39 165.6 99 77.8
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 2.1e-39 165.6 99 77.8
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.1e-39 165.6 103 75.7
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.1e-39 165.6 96 79.2
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.1e-39 165.6 106 72.6
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.7e-39 165.2 96 77.1
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.7e-39 165.2 107 73.8
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.6e-39 164.9 103 75.7
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.6e-39 164.9 105 73.3
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 6.1e-39 164.1 96 79.2
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 6.1e-39 164.1 96 79.2
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 6.1e-39 164.1 91 81.3
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.1e-39 164.1 103 77.7
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 8.0e-39 163.7 103 74.8
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.0e-38 163.3 99 76.8
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.0e-38 163.3 99 76.8
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.4e-38 162.9 104 75.0
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.8e-38 162.5 101 77.2
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.3e-38 162.2 109 75.2
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.3e-38 162.2 106 71.7
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 79.2
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 78.1
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 79.2
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 79.2
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 79.2
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 79.2
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 3.0e-38 161.8 108 72.2
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 5.2e-38 161.0 97 74.2
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 6.7e-38 160.6 85 84.7
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.2e-37 159.8 96 78.1
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-37 159.5 109 75.2
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.5e-37 159.5 109 74.3
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.6e-37 158.7 95 78.9
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.3e-37 158.3 109 74.3
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.3e-37 158.3 97 76.3
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 4.4e-37 157.9 109 74.3
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 9.7e-37 156.8 109 73.4
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.3e-36 156.4 109 73.4
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.7e-36 156.0 104 69.2
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.2e-36 155.6 91 81.3
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.8e-36 155.2 108 69.4
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 2.8e-36 155.2 95 76.8
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.7e-36 154.8 108 68.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 3.7e-36 154.8 104 68.3
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.8e-36 154.5 95 75.8
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 6.3e-36 154.1 102 74.5
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.4e-35 152.9 96 72.9
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 2.4e-35 152.1 94 75.5
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 7.0e-35 150.6 94 74.5
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 7.0e-35 150.6 94 74.5
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.0e-34 149.1 82 81.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.5e-34 148.3 95 73.7
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.5e-34 147.9 91 72.5
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.0e-33 146.7 94 76.6
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.0e-33 146.7 103 68.0
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.3e-33 146.4 84 78.6
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.6e-31 139.4 104 64.4
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.8e-30 136.0 104 63.5
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.8e-28 127.9 111 58.6
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 3.1e-27 125.2 99 60.6
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 5.9e-26 120.9 61 90.2
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.6e-23 112.8 75 73.3
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 4.7e-23 111.3 98 55.1
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 3.0e-22 108.6 95 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 4.4e-21 104.8 69 68.1
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.4e-19 99.8 61 78.7
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 2.4e-19 99.0 83 56.6
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 7.0e-19 97.4 57 78.9
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.9e-16 89.4 61 65.6
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.6e-15 86.3 73 52.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 3.6e-15 85.1 67 64.2
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.1e-11 73.6 64 53.1
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.9e-08 62.8 104 41.3
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 3.3e-08 62.0 42 71.4
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 5.6e-08 61.2 44 65.9
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.1e-06 57.0 49 57.1


User provided reference genes

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