Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2733.7 1383 100.0
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2707.2 1383 98.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2681.0 1383 97.3
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2655.6 1383 96.0
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2548.5 1385 91.7
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2544.6 1384 91.6
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2541.5 1383 91.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2538.8 1383 91.3
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2537.7 1384 91.3
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2536.9 1384 91.5
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2530.4 1388 91.4
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2528.8 1388 91.3
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2526.5 1384 90.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2525.7 1384 91.0
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2525.4 1386 90.9
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2520.7 1384 90.7
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2518.0 1385 90.6
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2518.0 1383 90.7
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2518.0 1383 90.0
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2517.3 1385 89.8
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2515.3 1383 90.3
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2515.0 1383 89.2
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2515.0 1383 90.4
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2512.6 1383 90.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1398 89.3
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2508.8 1399 89.6
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2507.6 1383 89.2
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2507.6 1383 90.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2506.9 1385 89.3
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2503.8 1384 90.3
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1384 89.6
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2500.7 1384 90.4
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1383 90.5
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2498.8 1383 89.9
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2498.0 1384 89.8
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2496.8 1382 89.4
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2495.7 1384 89.2
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2494.9 1383 89.2
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2493.4 1382 89.6
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1384 89.5
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2491.5 1383 89.2
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1383 88.6
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1383 89.1
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2488.8 1383 89.1
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1383 89.0
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1386 89.0
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1383 89.2
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1384 89.0
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1383 88.7
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2480.7 1384 89.6
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2480.7 1383 88.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2478.7 1383 88.6
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1383 88.6
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2473.7 1383 88.5
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1383 89.0
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1384 87.9
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1383 88.4
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1383 88.4
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2470.3 1384 88.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1385 88.0
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2461.4 1384 88.0
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2461.0 1410 87.0
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2460.3 1384 87.9
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2458.7 1394 87.4
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2457.6 1384 88.2
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2457.2 1384 88.2
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2451.4 1385 87.3
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1383 88.6
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2445.2 1386 87.0
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2439.8 1385 87.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1383 88.1
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2437.9 1386 87.5
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1335 90.0
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2429.1 1385 86.6
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2426.7 1385 86.6
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2421.4 1355 88.2
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2419.8 1384 87.1
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2417.9 1384 87.6
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2417.1 1446 83.3
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2411.3 1386 86.7
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2406.7 1386 86.7
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2402.1 1386 86.4
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2399.8 1386 86.3
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2394.0 1385 86.4
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1386 85.9
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2392.5 1386 85.9
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2377.4 1387 85.4
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2377.4 1387 85.4
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2377.4 1387 85.4
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2373.2 1388 85.1
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2373.2 1388 85.1
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2366.3 1384 85.7
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2365.1 1387 84.9
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2361.6 1385 85.2
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2350.1 1337 86.3
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2335.8 1383 84.4
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2322.4 1409 83.6
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2301.6 1331 84.1
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2299.6 1259 90.4
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2280.8 1258 90.5
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2258.4 1262 89.1
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2203.7 1343 82.6
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2187.5 1331 79.5
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2186.0 1333 80.2
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2183.7 1349 78.8
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2165.2 1331 79.4
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2165.2 1331 79.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2145.9 1332 78.0
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1974.9 1381 74.9
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1971.1 1121 87.1
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1951.0 1109 87.2
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1912.5 1334 70.5
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1911.7 1401 73.2
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1865.9 1346 68.2
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1708.7 913 92.2
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1691.0 914 90.5
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1630.5 898 89.5
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1502.6 808 91.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1496.1 809 90.9
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1160.2 690 84.6
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1115.9 675 81.9
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 2.8e-306 1055.8 669 80.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 3.0e-300 1035.8 571 87.6
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.6e-264 917.1 1202 44.4
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.9e-263 912.9 587 78.2
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.9e-234 815.8 471 86.2
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.0e-231 808.1 471 85.4
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.3e-226 791.2 472 84.1
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.6e-211 740.3 473 80.1
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 2.7e-208 730.3 398 90.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.8e-175 621.3 1399 32.6
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.1e-160 571.2 1488 29.8
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.8e-112 411.4 1281 28.6
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 3.0e-90 338.2 175 95.4
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 3.9e-66 258.1 147 85.7
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 5.0e-61 241.1 123 95.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 4.1e-47 194.9 107 91.6
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.0e-41 176.0 174 58.0
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 5.4e-31 141.4 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 4.3e-28 131.7 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 6.1e-27 127.9 91 72.5
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 3.3e-20 105.5 60 86.7


User provided reference genes

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