Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 7.6e-138 493.8 247 100.0
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 5.1e-110 401.4 227 88.5
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 7.2e-88 327.8 237 73.8
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 5.4e-83 311.6 242 65.7
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 1.1e-80 303.9 231 67.5
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.5e-80 303.5 231 67.1
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 4.2e-80 302.0 230 67.0
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 1.2e-79 300.4 219 68.0
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 2.1e-79 299.7 243 63.4
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 2.8e-79 299.3 224 66.5
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 4.0e-78 295.4 234 67.9
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 2.6e-77 292.7 252 62.3
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 3.4e-77 292.4 239 65.7
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 4.4e-77 292.0 227 65.6
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 4.4e-77 292.0 243 64.2
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 1.7e-76 290.0 229 63.3
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 2.2e-76 289.7 217 66.8
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 3.7e-76 288.9 232 65.1
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 3.7e-76 288.9 230 66.5
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 6.3e-76 288.1 227 66.1
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 1.8e-75 286.6 233 63.9
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 1.0e-73 280.8 241 58.1
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 1.3e-73 280.4 226 66.8
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 1.6e-71 273.5 238 60.1
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 2.8e-71 272.7 221 64.3
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 8.0e-71 271.2 238 59.7
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 4.0e-70 268.9 229 61.1
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 8.9e-70 267.7 244 59.0
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 1.5e-69 266.9 247 57.1
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 7.5e-69 264.6 223 63.7
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 2.9e-68 262.7 228 59.6
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 3.5e-66 255.8 228 61.8
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 1.7e-65 253.4 237 59.5
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 1.7e-65 253.4 237 59.5
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 1.1e-64 250.8 237 57.4
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 4.3e-64 248.8 227 58.1
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 5.6e-64 248.4 240 56.7
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 1.2e-63 247.3 240 55.8
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 1.4e-62 243.8 232 57.8
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.8e-62 243.4 233 56.2
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 3.1e-62 242.7 247 53.8
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 5.2e-62 241.9 235 55.7
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 6.8e-62 241.5 211 58.3
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 8.9e-62 241.1 240 55.4
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 1.5e-61 240.4 242 55.0
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 2.0e-61 240.0 241 53.9
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 3.4e-61 239.2 231 57.1
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 9.8e-61 237.7 241 53.1
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 1.7e-60 236.9 241 53.5
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 2.2e-60 236.5 231 58.0
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 4.9e-60 235.3 244 53.3
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 6.4e-60 235.0 236 54.7
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 8.3e-60 234.6 244 53.3
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 1.4e-59 233.8 243 54.3
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 1.9e-59 233.4 252 50.0
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 4.1e-59 232.3 240 51.2
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 9.2e-59 231.1 228 54.4
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 9.2e-59 231.1 243 51.9
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 1.6e-58 230.3 248 51.2
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.6e-58 230.3 248 51.6
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 2.1e-58 229.9 245 55.1
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 2.1e-58 229.9 228 52.6
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 4.6e-58 228.8 228 55.3
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 4.6e-58 228.8 245 53.9
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 6.0e-58 228.4 251 52.6
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.0e-57 227.6 242 52.5
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 3.0e-57 226.1 235 54.9
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 4.3e-56 222.2 234 53.4
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 4.3e-56 222.2 244 52.5
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 7.3e-56 221.5 226 52.2
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 2.1e-55 219.9 247 49.0
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 3.6e-55 219.2 230 52.2
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 3.6e-55 219.2 230 52.2
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 1.1e-54 217.6 235 49.4
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 1.4e-54 217.2 230 53.0
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.1e-54 216.1 290 44.8
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.2e-53 214.2 247 50.6
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 1.5e-53 213.8 235 49.4
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 3.4e-53 212.6 232 50.9
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 4.7e-47 192.2 232 46.6
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.4e-46 189.9 163 63.2
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.4e-43 180.6 130 69.2
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.1e-42 176.8 239 43.9
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.7e-42 176.4 252 42.1
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 7.8e-42 174.9 286 36.7
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 1.1e-40 171.0 242 43.0
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 9.6e-40 167.9 235 43.4
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 1.4e-38 164.1 289 37.4
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 7.6e-37 158.3 243 40.7
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 5.4e-35 152.1 147 54.4
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 2.7e-34 149.8 326 31.6
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.9e-33 146.0 137 59.1
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 7.3e-32 141.7 137 56.9
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 1.3e-28 131.0 200 44.0
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 1.6e-26 124.0 95 66.3
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 3.5e-26 122.9 99 61.6
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 3.0e-25 119.8 93 62.4
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 3.9e-25 119.4 226 36.7
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 5.6e-24 115.5 153 43.8
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 6.5e-20 102.1 181 34.8
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 6.7e-17 92.0 96 50.0
MELO3C023144.2 Cucumis melo HOM05D007273 ORTHO05D009230 4.3e-16 89.4 48 85.4
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.2e-13 81.3 135 40.0
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 1.6e-10 70.9 61 62.3


User provided reference genes

Program Settings