Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 3.5e-164 581.6 314 100.0
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 5.5e-133 478.0 288 93.1
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 3.2e-117 425.6 263 85.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 8.1e-84 314.7 254 72.4
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 6.4e-73 278.5 252 71.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 8.7e-54 214.9 265 55.1
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.1e-52 210.3 262 52.7
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.4e-50 203.0 262 51.1
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.9e-49 199.1 263 52.1
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.9e-49 199.1 261 51.3
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 6.4e-49 198.7 263 52.9
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.4e-49 198.7 269 49.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.9e-48 197.2 261 51.7
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.4e-48 196.8 265 52.5
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.2e-48 196.4 280 49.3
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 9.3e-48 194.9 261 50.6
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.2e-47 194.5 283 49.5
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 2.7e-47 193.4 261 49.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.3e-46 191.0 259 51.4
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.9e-46 189.5 266 47.0
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 5.1e-46 189.1 269 50.2
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 5.1e-46 189.1 264 50.8
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 6.7e-46 188.7 269 52.4
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 8.7e-46 188.3 263 49.8
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.3e-45 186.4 264 49.2
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 3.3e-45 186.4 258 49.2
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.3e-45 186.4 264 53.0
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 4.3e-45 186.0 255 49.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.6e-45 184.9 272 49.6
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.6e-44 184.1 273 49.1
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.8e-44 183.3 258 49.2
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 2.8e-44 183.3 266 51.5
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.7e-44 183.0 271 50.6
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.8e-43 180.6 265 49.1
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 5.3e-43 179.1 267 48.7
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 6.9e-43 178.7 267 49.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.0e-42 177.2 274 49.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.4e-42 176.4 259 49.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 4.5e-42 176.0 265 49.1
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.8e-42 175.6 268 49.3
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 7.6e-42 175.3 270 48.9
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 1.0e-41 174.9 265 49.1
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.3e-41 174.5 270 48.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 6.5e-41 172.2 271 48.7
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.1e-40 171.4 246 48.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.9e-40 170.6 273 47.6
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.2e-40 169.9 264 47.7
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 5.5e-40 169.1 264 47.0
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 7.1e-40 168.7 266 48.1
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 9.3e-40 168.3 291 46.0
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.6e-39 167.5 272 47.1
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.6e-39 167.5 272 47.1
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 6.0e-39 165.6 265 46.0
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 6.0e-39 165.6 260 48.5
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 7.9e-39 165.2 269 45.0
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.9e-39 165.2 261 47.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.0e-38 164.9 263 47.9
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-38 164.9 263 47.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.0e-38 164.9 263 47.9
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.3e-38 164.5 264 47.7
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-38 164.1 264 43.9
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.3e-38 163.7 266 45.5
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 3.0e-38 163.3 264 45.8
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.9e-38 162.9 261 47.1
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-37 161.4 270 47.4
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-37 161.0 263 47.1
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-37 161.0 272 46.0
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.9e-37 160.6 251 46.6
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.9e-37 160.6 264 43.9
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 3.3e-37 159.8 266 47.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.3e-37 159.8 260 46.9
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.3e-37 159.8 260 46.9
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 3.3e-37 159.8 258 45.7
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.6e-36 157.5 287 43.9
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.1e-36 157.1 265 46.8
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 2.8e-36 156.8 260 45.4
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.8e-36 156.8 260 46.9
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 3.7e-36 156.4 271 44.3
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.8e-36 156.0 260 48.1
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 6.3e-36 155.6 272 42.6
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.8e-35 154.1 266 44.0
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 2.4e-35 153.7 268 45.1
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 3.1e-35 153.3 264 42.8
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.3e-35 152.5 177 55.9
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.3e-35 152.5 267 43.4
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.9e-35 152.1 262 45.0
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.0e-35 151.8 256 46.1
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 9.0e-35 151.8 276 44.9
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.2e-34 151.4 201 50.2
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.2e-34 151.4 307 37.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-34 151.4 265 43.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-34 151.0 267 42.7
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.4e-34 149.8 276 44.9
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 4.5e-34 149.4 270 46.3
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 5.9e-34 149.1 262 43.5
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.9e-34 149.1 263 44.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 5.9e-34 149.1 264 44.7
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-33 147.9 263 43.7
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-33 147.9 263 43.7
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 6.5e-33 145.6 263 43.7
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 6.5e-33 145.6 312 39.4
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.4e-32 144.4 272 44.9
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.9e-32 144.1 275 42.9
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.9e-32 144.1 270 42.6
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.9e-32 144.1 265 44.2
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.5e-32 143.7 264 43.9
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 5.5e-32 142.5 273 43.2
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 7.2e-32 142.1 204 48.5
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 9.3e-32 141.7 267 43.8
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 9.3e-32 141.7 267 43.8
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.2e-31 141.4 268 41.4
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 3.6e-31 139.8 252 43.3
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.6e-31 139.8 269 41.6
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 2.3e-30 137.1 310 37.7
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 3.0e-30 136.7 260 41.5
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 3.0e-30 136.7 252 43.3
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-29 134.8 279 40.9
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.5e-29 134.4 269 42.4
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.5e-29 134.4 269 42.8
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.9e-29 134.0 207 46.4
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.5e-29 133.7 208 46.2
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.3e-29 132.9 268 41.8
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 4.3e-29 132.9 287 38.3
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 4.3e-29 132.9 286 38.5
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 5.7e-29 132.5 266 42.1
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 5.7e-29 132.5 159 53.5
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.7e-29 132.5 256 41.8
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.4e-29 132.1 250 45.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.2e-28 130.6 252 40.9
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.8e-28 130.2 242 44.6
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 3.7e-28 129.8 264 40.9
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 4.8e-28 129.4 259 40.2
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-27 128.3 282 38.7
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.4e-27 127.9 191 49.2
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 4.1e-27 126.3 259 40.9
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 9.0e-27 125.2 185 48.6
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 4.5e-26 122.9 165 48.5
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 4.5e-26 122.9 180 48.9
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.9e-26 122.5 257 42.0
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 7.7e-26 122.1 250 41.2
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 7.7e-26 122.1 258 40.3
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.9e-25 120.2 272 39.0
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 3.8e-25 119.8 261 39.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.5e-24 115.9 272 38.2
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 9.4e-24 115.2 262 38.5
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.2e-23 114.8 253 37.9
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.6e-23 114.4 148 51.4
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.7e-23 113.6 207 40.1
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.0e-22 111.7 252 36.9
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.8e-22 110.9 256 35.9
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.8e-22 110.9 256 35.5
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.3e-22 110.5 259 39.0
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 8.8e-22 108.6 267 37.5
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.0e-21 107.5 199 38.7
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.4e-21 105.5 250 34.0
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.7e-20 104.4 250 34.0
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.2e-20 104.0 177 37.3
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 6.3e-20 102.4 200 40.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.4e-19 100.5 254 37.0
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 5.3e-19 99.4 111 55.9
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 6.5e-17 92.4 126 50.0
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.6e-15 87.8 252 33.7
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 2.7e-15 87.0 137 42.3
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 7.9e-15 85.5 97 58.8
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.9e-14 83.2 79 63.3
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 9.7e-13 78.6 196 32.7
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.7e-12 77.8 257 30.0
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 6.3e-12 75.9 71 63.4
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.8e-11 74.3 137 39.4
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 2.4e-11 73.9 366 28.1
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 4.1e-11 73.2 62 66.1
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 7.0e-11 72.4 224 33.0
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 3.2e-08 63.5 206 32.0
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 2.3e-06 57.4 176 30.7
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.3e-06 57.4 70 52.9
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 3.0e-06 57.0 170 28.2
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 4.0e-06 56.6 218 31.2
ATR0605G284 Amborella trichopoda HOM05D020767 ORTHO05D003885 5.2e-06 56.2 44 63.6
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.2e-06 56.2 71 52.1
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.8e-06 55.5 78 44.9


User provided reference genes

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