Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G010370 Cucumis sativus L. HOM05D007158 ORTHO05D007424 7.1e-123 444.1 255 100.0
MELO3C010379.2 Cucumis melo HOM05D007158 ORTHO05D007424 1.1e-107 393.7 255 86.7
ClCG07G016450 Citrullus lanatus HOM05D007158 ORTHO05D007424 4.7e-106 388.3 255 83.1
Cfa007880 Carpinus fangiana HOM05D007158 ORTHO05D007424 1.2e-53 214.2 255 51.8
Sed0005493 Sechium edule HOM05D007158 ORTHO05D007424 6.4e-47 191.8 164 65.9
QL02p049322 Quercus lobata HOM05D007158 ORTHO05D007424 1.0e-44 184.5 216 51.4
Ciclev10012598m.g Citrus clementina HOM05D007158 ORTHO05D007424 4.0e-41 172.6 227 47.6
CiPaw.04G044500 Carya illinoinensis HOM05D007158 ORTHO05D007424 1.5e-40 170.6 255 43.5
Thecc.04G126100 Theobroma cacao HOM05D007158 ORTHO05D007424 8.4e-39 164.9 235 48.1
PGR004G0702 Punica granatum HOM05D007158 ORTHO05D007424 2.4e-38 163.3 218 47.2
Glyma.02G090200 Glycine max HOM05D007158 ORTHO05D007424 5.4e-38 162.2 198 53.0
Dinv14854 Davidia involucrata HOM05D007158 ORTHO05D007424 9.3e-38 161.4 193 53.4
Prupe.3G150100 Prunus persica HOM05D007158 ORTHO05D007424 1.0e-36 157.9 229 48.0
Duzib138G0519 Durio zibethinus HOM05D007158 ORTHO05D007424 1.7e-36 157.1 238 45.4
MD09G1258200 Malus domestica HOM05D007158 ORTHO05D007424 6.6e-36 155.2 241 46.5
Rhsim08G0084200 Rhododendron simsii HOM05D007158 ORTHO05D007424 2.5e-35 153.3 196 51.5
GSVIVG01030945001 Vitis vinifera HOM05D007158 ORTHO05D007424 4.3e-35 152.5 216 47.2
Lalb_Chr10g0091481 Lupinus albus HOM05D007158 ORTHO05D007424 5.6e-35 152.1 194 49.0
COL.COLO4_03615 Corchorus olitorius HOM05D007158 ORTHO05D007424 7.3e-35 151.8 203 49.8
CANSAT78G1746 Cannabis sativa HOM05D007158 ORTHO05D007424 1.6e-34 150.6 198 50.5
Migut.H00250 Erythranthe guttata HOM05D007158 ORTHO05D007424 2.8e-34 149.8 235 45.1
Gohir.A11G161300 Gossypium hirsutum HOM05D007158 ORTHO05D007424 4.8e-34 149.1 234 45.3
Glyma.18G293000 Glycine max HOM05D007158 ORTHO05D007424 8.1e-34 148.3 200 48.5
Duzib133G0688 Durio zibethinus HOM05D007158 ORTHO05D007424 1.1e-33 147.9 235 42.6
Eucgr.F02798 Eucalyptus grandis HOM05D007158 ORTHO05D007424 1.8e-33 147.1 223 45.7
Gorai.007G178700 Gossypium raimondii HOM05D007158 ORTHO05D007424 1.8e-33 147.1 234 44.9
Gohir.D11G167600 Gossypium hirsutum HOM05D007158 ORTHO05D007424 2.4e-33 146.7 232 45.3
Cpa.g.sc170.15 Carica papaya HOM05D007158 ORTHO05D007424 5.3e-33 145.6 247 43.3
Phvul.008G009100 Phaseolus vulgaris HOM05D007158 ORTHO05D007424 3.4e-32 142.9 240 41.7
ECA232G0903 Erigeron canadensis HOM05D007158 ORTHO05D007424 6.4e-31 138.7 206 48.5
RcHm_v2.0_Chr1g0332591 Rosa chinensis HOM05D007158 ORTHO05D007424 1.1e-30 137.9 244 41.4
VMungo1383G1080 Vigna mungo HOM05D007158 ORTHO05D007424 4.2e-30 136.0 206 49.5
Haze_14197 Corylus avellana HOM05D007158 ORTHO05D007424 1.2e-29 134.4 160 50.6
TAR629G2388 Trochodendron aralioides HOM05D007158 ORTHO05D007424 2.1e-29 133.7 257 42.0
DCAR_025891 Daucus carota HOM05D007158 ORTHO05D007424 2.7e-29 133.3 204 45.6
Atru.chr1.1578 Acer truncatum HOM05D007158 ORTHO05D007424 7.9e-29 131.7 207 44.4
Hma1.2p1_0500F.1_g167110 Hydrangea macrophylla HOM05D007158 ORTHO05D007424 7.9e-29 131.7 222 44.1
TWI74G0884 Tripterygium wilfordii HOM05D007158 ORTHO05D007424 7.9e-29 131.7 211 43.6
Cc07_g08430 Coffea canephora HOM05D007158 ORTHO05D007424 1.7e-28 130.6 241 40.7
Lj1g0013464 Lotus japonicus HOM05D007158 ORTHO05D007424 2.3e-28 130.2 192 45.8
CAN.G225.14 Capsicum annuum HOM05D007158 ORTHO05D007424 8.7e-28 128.3 244 41.0
Hund13698 Selenicereus undatus HOM05D007158 ORTHO05D007424 8.7e-28 128.3 211 41.2
Manes.01G113800 Manihot esculenta HOM05D007158 ORTHO05D007424 1.1e-27 127.9 218 44.5
CDE04G0479 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 1.5e-27 127.5 244 41.4
SGA_v2.0_scaffold202G41480 Striga asiatica HOM05D007158 ORTHO05D007424 2.5e-27 126.7 213 45.1
HanXRQChr09g0262471 Helianthus annuus HOM05D007158 ORTHO05D007424 3.3e-27 126.3 149 55.0
Sabra17G0103400 Salix brachista HOM05D007158 ORTHO05D007424 3.3e-27 126.3 214 38.8
Potri.017G121000 Populus trichocarpa HOM05D007158 ORTHO05D007424 4.3e-27 125.9 284 36.3
Medtr7g082850 Medicago truncatula HOM05D007158 ORTHO05D007424 5.6e-27 125.6 193 43.5
Psat3g097040 Pisum sativum HOM05D007158 ORTHO05D007424 5.6e-27 125.6 241 41.1
MSTRG.2781 Avicennia marina HOM05D007158 ORTHO05D007424 7.3e-27 125.2 207 42.5
Oeu047435.1 Olea europaea HOM05D007158 ORTHO05D007424 1.3e-26 124.4 265 38.1
Lj4A182G65 Lonicera japonica HOM05D007158 ORTHO05D007424 2.1e-26 123.6 134 52.2
Dinv33973 Davidia involucrata HOM05D007158 ORTHO05D007424 2.8e-26 123.2 276 40.2
Rhsim10G0076900 Rhododendron simsii HOM05D007158 ORTHO05D007424 2.8e-26 123.2 219 41.1
TPR.G28397 Trifolium pratense HOM05D007158 ORTHO05D007424 3.6e-26 122.9 198 43.9
Solyc02g063280.4 Solanum lycopersicum HOM05D007158 ORTHO05D007424 6.2e-26 122.1 239 39.3
Sopen02g014350 Solanum pennellii HOM05D007158 ORTHO05D007424 6.2e-26 122.1 237 39.2
Actinidia17647 Actinidia chinensis HOM05D007158 ORTHO05D007424 8.1e-26 121.7 264 39.8
PGSC0003DMG400010413 Solanum tuberosum HOM05D007158 ORTHO05D007424 8.1e-26 121.7 237 39.2
FvH4_7g05720 Fragaria vesca HOM05D007158 ORTHO05D007424 1.4e-25 120.9 225 41.8
FAN01G1160 Fragaria x ananassa HOM05D007158 ORTHO05D007424 1.4e-25 120.9 225 41.8
TAR374G0148 Trochodendron aralioides HOM05D007158 ORTHO05D007424 1.4e-25 120.9 226 44.2
Lsat_1_v5_gn_4_156301 Lactuca sativa HOM05D007158 ORTHO05D007424 1.8e-25 120.6 201 43.8
Ca_08098_v3 Cicer arietinum L. HOM05D007158 ORTHO05D007424 2.4e-25 120.2 193 45.6
Nitab4.5_0002644g0050 Nicotiana tabacum HOM05D007158 ORTHO05D007424 3.1e-25 119.8 270 38.5
FAN10G2330 Fragaria x ananassa HOM05D007158 ORTHO05D007424 9.0e-25 118.2 193 44.0
Potri.004G094500 Populus trichocarpa HOM05D007158 ORTHO05D007424 1.2e-24 117.9 288 35.4
arahy.Tifrunner.gnm1.ann1.5M3IQK Arachis hypogaea HOM05D007158 ORTHO05D007424 3.4e-24 116.3 200 42.0
Nitab4.5_0000036g0590 Nicotiana tabacum HOM05D007158 ORTHO05D007424 4.5e-24 115.9 242 38.0
Zm00001eb300940 Zea mays HOM05D007158 ORTHO05D007424 2.9e-23 113.2 210 39.5
arahy.Tifrunner.gnm1.ann1.896A9W Arachis hypogaea HOM05D007158 ORTHO05D007424 1.4e-22 110.9 198 39.4
Peaxi162Scf00343g00058 Petunia axillaris HOM05D007158 ORTHO05D007424 1.4e-22 110.9 245 37.1
Nn4g24036 Nelumbo nucifera HOM05D007158 ORTHO05D007424 3.2e-22 109.8 217 43.3
Sabra04G0063800 Salix brachista HOM05D007158 ORTHO05D007424 7.1e-22 108.6 250 36.4
Sc10g0001000 Simmondsia chinensis HOM05D007158 ORTHO05D007424 9.3e-22 108.2 198 41.9
Aqoxy3G00164 Aquilegia oxysepala HOM05D007158 ORTHO05D007424 1.6e-21 107.5 221 40.7
AUR62023262 Chenopodium quinoa HOM05D007158 ORTHO05D007424 2.7e-21 106.7 164 45.1
Os01g0505700 Oryza sativa ssp. japonica HOM05D007158 ORTHO05D007424 2.7e-21 106.7 173 41.0
FAN23G0239 Fragaria x ananassa HOM05D007158 ORTHO05D007424 3.5e-21 106.3 233 39.1
Sabra17G0100100 Salix brachista HOM05D007158 ORTHO05D007424 6.0e-21 105.5 222 38.7
CDE06G2846 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 1.3e-20 104.4 225 43.6
vmacro18064 Vaccinium macrocarpon HOM05D007158 ORTHO05D007424 2.3e-20 103.6 204 40.2
PSO339G0418 Papaver somniferum HOM05D007158 ORTHO05D007424 5.1e-20 102.4 150 46.7
Ah.10g037870 Amaranthus hybridus HOM05D007158 ORTHO05D007424 6.7e-20 102.1 235 36.6
Rhsim10G0074300 Rhododendron simsii HOM05D007158 ORTHO05D007424 1.5e-19 100.9 213 39.0
EL10Ac2g04517 Beta vulgaris HOM05D007158 ORTHO05D007424 4.3e-19 99.4 172 43.6
FAN04G1654 Fragaria x ananassa HOM05D007158 ORTHO05D007424 7.4e-19 98.6 225 36.9
THA.LOC104809979 Tarenaya hassleriana HOM05D007158 ORTHO05D007424 7.4e-19 98.6 255 33.3
FAN03G1259 Fragaria x ananassa HOM05D007158 ORTHO05D007424 1.6e-18 97.4 225 38.7
ATR0743G078 Amborella trichopoda HOM05D007158 ORTHO05D007424 2.1e-18 97.1 192 38.5
Oeu061824.1 Olea europaea HOM05D007158 ORTHO05D007424 1.1e-17 94.7 166 42.8
PSO384G2845 Papaver somniferum HOM05D007158 ORTHO05D007424 3.1e-17 93.2 106 51.9
SHI25695 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-17 91.7 89 50.6
HPP92_023114 Vanilla planifolia HOM05D007158 ORTHO05D007424 1.5e-16 90.9 231 37.7
AT1G60640 Arabidopsis thaliana HOM05D007158 ORTHO05D007424 2.3e-12 77.0 228 30.7
MD00G1054400 Malus domestica HOM05D007158 ORTHO05D007424 7.4e-11 72.0 79 58.2
Pp3c14_9040 Physcomitrium patens HOM05D007158 ORTHO05D007424 4.8e-10 69.3 64 54.7
Carub.0002s0469 Capsella rubella HOM05D007158 ORTHO05D007424 8.2e-10 68.6 184 32.6
SMO119G0024 Selaginella moellendorffii HOM05D007158 ORTHO05D007424 1.1e-09 68.2 93 40.9
Haze_14196 Corylus avellana HOM05D007158 ORTHO05D007424 5.3e-09 65.9 72 56.9
BolC1t03688H Brassica oleracea HOM05D011338 ORTHO05D007424 6.9e-09 65.5 228 28.5
AL2G15950 Arabidopsis lyrata HOM05D011338 ORTHO05D007424 3.4e-08 63.2 224 29.9
Thhalv10023615m.g Eutrema salsugineum HOM05D011338 ORTHO05D007424 4.5e-08 62.8 194 32.0
AagrBONN_evm.TU.Sc2ySwM_117.711 Anthoceros agrestis HOM05D007158 ORTHO05D007424 1.0e-07 61.6 224 29.9
BcaC09g49385 Brassica carinata HOM05D011338 ORTHO05D007424 1.3e-07 61.2 228 29.4
C01p37190 Brassica napus HOM05D011338 ORTHO05D007424 1.3e-07 61.2 228 29.4
Mapoly0099s0058 Marchantia polymorpha HOM05D007158 ORTHO05D007424 2.2e-07 60.5 205 30.7
A01p29410 Brassica napus HOM05D011338 ORTHO05D007424 2.9e-07 60.1 179 31.8
CBR_g32195 Chara braunii HOM05D007158 ORTHO05D007424 2.9e-07 60.1 59 45.8
unitig_21.g20970 Utricularia gibba HOM05D007158 ORTHO05D007424 1.4e-06 57.8 236 28.8
CARHR052290 Cardamine hirsuta HOM05D007158 ORTHO05D007424 2.5e-06 57.0 216 31.0
Sp2g04080 Schrenkiella parvula HOM05D011338 ORTHO05D007424 5.5e-06 55.8 227 29.5
Aa31LG2G9720 Aethionema arabicum HOM05D011338 ORTHO05D007424 9.3e-06 55.1 199 27.6


User provided reference genes

Program Settings