Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1478.8 801 100.0
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1436.8 802 97.4
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1364.0 846 88.5
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1353.6 801 90.3
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1224.2 805 79.8
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1207.6 800 78.1
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1201.4 804 78.0
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1200.3 796 77.6
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1191.4 802 76.6
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1191.0 803 78.7
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1190.3 802 77.2
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1189.5 799 79.7
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1182.5 802 76.1
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1182.5 806 76.6
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1180.2 783 78.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1170.2 801 77.4
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1169.8 806 75.6
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 814 76.5
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 794 76.6
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1168.3 804 77.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1162.9 801 74.8
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1162.5 809 77.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1158.3 807 75.5
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1157.5 794 77.7
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1153.3 804 76.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1152.5 818 73.3
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1143.3 800 76.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1141.7 876 71.3
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1141.7 800 76.0
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 846 72.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 813 73.8
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1137.9 807 75.3
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1136.7 759 78.0
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1135.2 806 73.0
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1131.3 805 76.3
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1130.9 815 73.7
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1130.9 814 74.7
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1130.5 798 73.7
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 814 75.4
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1126.3 804 73.9
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1126.3 801 73.0
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 799 74.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 901 69.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 805 73.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1124.0 804 73.6
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1123.2 807 73.0
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1122.8 798 72.9
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 799 72.5
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1109.7 801 72.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1105.1 801 72.2
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1103.6 798 74.4
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1097.8 807 71.3
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1097.8 802 71.1
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 790 71.9
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 800 71.6
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1090.5 807 70.6
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1084.7 790 72.3
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 808 73.0
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1082.8 797 72.0
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 798 69.9
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1081.6 792 71.6
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1079.3 824 69.9
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 797 71.0
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 794 70.3
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.5e-312 1074.3 790 71.6
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 810 70.4
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 4.9e-311 1070.8 812 69.3
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.1e-310 1069.7 767 73.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 9.2e-310 1066.6 797 70.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 2.1e-309 1065.4 803 69.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 6.0e-309 1063.9 803 69.0
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-308 1063.1 791 70.8
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.3e-308 1062.0 812 69.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 806 67.5
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-307 1059.3 790 70.3
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.5e-307 1059.3 790 70.3
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 812 67.7
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.2e-306 1056.2 803 69.5
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 2.8e-306 1055.0 647 83.6
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 3.1e-305 1051.6 789 70.5
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 789 70.5
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 789 70.5
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 5.8e-304 1047.3 798 68.2
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 3.8e-303 1044.6 799 68.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 4.2e-302 1041.2 792 67.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 6.0e-301 1037.3 647 82.4
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 7.8e-301 1036.9 803 68.0
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.3e-299 1031.2 647 81.9
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.6e-299 1030.0 804 68.0
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 8.1e-298 1026.9 796 67.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.0e-296 1022.3 805 69.2
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.2e-294 1014.6 802 67.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 8.7e-292 1006.9 807 66.9
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.5e-291 1006.1 798 67.3
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.4e-287 990.7 790 66.8
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 7.4e-283 977.2 791 66.6
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 5.8e-280 967.6 789 65.7
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.1e-278 963.4 798 64.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.0e-276 956.8 789 65.8
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 6.3e-274 947.6 810 63.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.8e-271 938.3 784 63.8
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.5e-270 935.6 845 60.5
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-267 926.4 790 63.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 4.1e-265 918.3 812 60.2
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 5.9e-264 914.4 785 64.7
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-260 902.5 791 63.3
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.0e-255 884.8 716 68.9
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-251 873.2 797 60.5
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.2e-250 869.4 815 57.8
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.1e-249 865.5 822 57.7
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.0e-244 849.0 797 56.5
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-233 813.9 638 68.5
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.3e-223 780.4 657 65.0
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 3.4e-211 739.2 480 79.6
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.1e-205 719.9 805 49.2
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.9e-188 661.4 852 45.4
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.9e-188 661.4 852 45.4
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.9e-182 643.7 877 44.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-174 617.5 621 56.5
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.9e-172 608.6 847 43.0
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.2e-170 603.6 532 62.4
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.4e-169 600.9 654 50.3
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.3e-166 589.3 459 65.4
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 4.8e-165 585.9 839 43.4
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.1e-157 560.5 434 66.4
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.5e-155 554.3 596 51.3
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.0e-139 500.7 407 66.6
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-107 395.2 610 43.1
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 7.8e-107 392.5 617 43.8
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.8e-87 328.2 213 80.8
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.3e-81 307.0 695 35.1
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 8.1e-80 302.8 766 31.2
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.5e-73 281.2 207 70.5
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 5.2e-71 273.5 197 72.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 5.2e-71 273.5 197 72.1
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-70 271.2 197 71.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.7e-66 258.5 211 64.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.5e-65 255.4 236 59.3
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 6.7e-58 229.9 482 37.3
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.1e-55 221.1 451 36.4
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.2e-52 211.1 131 84.0
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 1.3e-50 205.7 121 80.2
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.7e-41 172.9 176 56.2
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 4.8e-40 170.6 802 26.7
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.0e-38 165.2 87 83.9
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.0e-38 165.2 87 83.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.3e-37 162.5 91 82.4
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 2.4e-31 141.7 166 47.0
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.5e-30 137.5 338 31.4
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.7e-26 123.6 107 60.7
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-24 119.4 89 61.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.4e-22 111.3 75 80.0
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.0e-21 107.5 108 52.8
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.1e-20 106.3 71 69.0
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.1e-19 100.5 144 41.0
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 8.0e-19 100.1 74 63.5
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.0e-18 99.8 57 93.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.4e-17 94.4 120 46.7
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.4e-15 89.4 115 47.0
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.0e-13 83.2 51 72.5
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.7e-13 82.4 59 62.7
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.9e-13 81.6 77 54.5
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-11 75.5 128 36.7
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 3.3e-09 68.2 76 51.3
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 5.7e-09 67.4 52 71.2
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.7e-08 64.7 105 41.0
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 2.4e-07 62.0 110 40.0
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 3.1e-07 61.6 50 68.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-06 59.3 50 64.0
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.7e-06 58.5 247 26.7
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 3.5e-06 58.2 65 55.4


User provided reference genes

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