Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 0.0e+00 1172.1 568 100.0
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 0.0e+00 1151.3 568 97.9
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 0.0e+00 1100.9 568 92.8
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 564 82.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.2e-287 992.6 568 82.2
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 2.7e-287 991.5 568 81.9
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.0e-286 989.6 561 83.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.7e-286 988.8 564 81.9
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 5.0e-286 987.3 564 82.4
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.9e-285 985.3 561 82.9
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 5.6e-285 983.8 568 81.5
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 9.5e-285 983.0 564 81.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 9.5e-285 983.0 564 81.7
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.6e-284 982.2 566 82.2
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.1e-283 979.5 564 81.7
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 4.0e-283 977.6 563 81.5
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 5.2e-283 977.2 564 80.7
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.8e-283 976.9 561 81.8
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.4e-282 974.2 563 80.8
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 5.8e-282 973.8 561 81.8
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 7.5e-282 973.4 564 81.4
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 9.9e-282 973.0 564 81.0
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 9.9e-282 973.0 568 80.5
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 9.9e-282 973.0 563 80.8
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 80.9
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 80.9
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.9e-281 971.5 568 81.2
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 4.9e-281 970.7 564 81.0
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 4.9e-281 970.7 563 80.6
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.4e-281 970.3 564 80.9
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.4e-281 970.3 564 80.7
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.4e-280 969.1 563 81.3
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 3.2e-280 968.0 564 80.9
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 7.1e-280 966.8 561 80.4
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 7.1e-280 966.8 564 80.1
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 9.2e-280 966.5 563 80.8
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 9.2e-280 966.5 561 81.3
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.2e-279 966.1 565 80.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.6e-279 965.7 564 80.0
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.1e-279 965.3 564 80.9
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.1e-279 965.3 561 80.6
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.1e-279 965.3 561 80.6
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.7e-279 964.9 564 80.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 6.0e-279 963.8 557 81.3
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 3.9e-278 961.1 561 80.7
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.9e-278 961.1 563 79.8
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 5.1e-278 960.7 564 80.1
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 6.6e-278 960.3 564 80.0
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-277 959.5 568 79.2
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.1e-277 959.5 550 81.3
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.5e-277 959.1 568 78.7
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.9e-277 958.7 564 80.5
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.9e-277 958.7 564 80.5
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.9e-277 958.7 564 80.3
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.9e-277 958.7 563 80.3
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.9e-277 958.7 563 79.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.3e-277 958.0 470 97.4
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.3e-277 957.6 563 80.6
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 9.5e-277 956.4 556 80.8
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 9.5e-277 956.4 551 81.7
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.6e-276 955.7 564 79.8
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.8e-276 954.9 563 80.5
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 8.1e-276 953.4 564 80.9
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.4e-275 952.6 564 79.1
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.4e-275 951.8 561 80.0
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 2.4e-275 951.8 568 78.9
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 8.9e-275 949.9 568 78.7
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 8.9e-275 949.9 564 79.1
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.9e-275 949.9 552 80.8
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.2e-274 949.5 568 79.0
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.0e-274 948.7 557 80.1
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 2.6e-274 948.3 568 78.3
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 2.6e-274 948.3 553 80.3
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 2.6e-274 948.3 568 78.5
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 3.4e-274 948.0 564 79.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 3.4e-274 948.0 564 79.4
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.7e-273 945.7 565 78.9
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.7e-273 945.7 556 79.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 4.9e-273 944.1 566 79.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.2e-272 941.4 534 82.6
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 4.1e-272 941.0 566 78.3
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.1e-271 938.7 570 77.2
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.7e-271 938.3 562 79.0
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.5e-269 932.6 568 77.1
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.3e-269 931.0 562 77.8
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.6e-268 929.1 563 78.3
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.1e-267 924.9 549 79.1
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.1e-267 924.9 566 77.4
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.0e-266 922.2 564 76.4
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.8e-266 920.6 549 78.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.6e-266 920.2 568 76.8
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 9.9e-266 919.8 566 77.0
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.9e-265 918.3 562 76.2
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-264 915.6 562 76.2
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.7e-263 911.8 562 76.2
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 2.3e-262 908.7 564 76.6
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 8.7e-262 906.7 564 75.0
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.1e-261 906.4 564 75.4
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-261 906.4 564 75.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-261 905.6 564 75.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-261 905.6 564 75.4
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.5e-261 905.2 564 75.5
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 5.6e-261 904.0 564 75.4
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-261 904.0 564 75.4
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-261 904.0 564 75.4
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 5.6e-261 904.0 564 75.4
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 5.6e-261 904.0 564 75.0
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 7.3e-261 903.7 564 75.2
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.6e-260 902.5 564 74.8
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.8e-260 901.7 562 76.3
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.8e-260 901.0 564 75.2
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 6.2e-260 900.6 564 75.0
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.1e-259 899.8 564 74.3
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.4e-259 898.7 564 74.6
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 5.3e-259 897.5 564 74.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.3e-259 897.5 564 75.2
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 5.3e-259 897.5 554 78.0
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 6.9e-259 897.1 564 74.5
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.9e-257 891.7 561 75.8
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 4.9e-257 891.0 568 73.6
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.9e-256 889.0 551 77.5
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 4.2e-256 887.9 546 75.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.7e-255 885.2 541 76.2
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.0e-254 883.2 541 75.8
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.8e-254 882.5 551 75.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.3e-254 882.1 563 75.7
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 4.8e-252 874.4 570 73.0
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 5.8e-250 867.5 564 71.8
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 2.4e-248 862.1 569 71.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 4.2e-248 861.3 524 76.5
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-245 852.4 562 72.1
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.2e-244 847.0 564 70.7
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.8e-241 838.2 563 68.7
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.3e-237 825.1 564 68.8
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 4.1e-235 818.1 565 69.9
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 6.9e-235 817.4 540 72.0
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.6e-234 815.5 557 72.2
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 5.9e-234 814.3 553 70.9
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.2e-233 812.4 565 68.1
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.4e-206 723.4 424 80.9
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-200 703.7 425 76.9
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.5e-192 676.0 563 59.5
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.7e-186 656.0 567 57.8
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 5.8e-181 638.3 550 55.5
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.0e-177 625.2 373 76.1
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.2e-167 591.7 488 55.5
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 5.2e-166 588.6 524 53.4
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-163 580.5 329 79.6
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.2e-157 560.8 417 66.9
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.5e-152 543.9 417 60.9
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 5.8e-149 531.9 292 80.8
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.3e-129 466.8 304 71.4
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.9e-124 449.9 567 45.9
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.4e-124 448.4 568 46.0
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.8e-121 440.7 468 52.6
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.7e-84 317.8 491 36.0
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.0e-81 307.0 213 66.7
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 4.7e-74 283.1 548 34.3
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 3.9e-60 236.9 145 72.4
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 5.0e-60 236.5 145 72.4
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.7e-52 211.5 166 58.4
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.4e-48 196.8 133 73.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.9e-47 193.4 128 75.8
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.7e-44 184.9 121 70.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-42 178.3 166 59.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-42 176.4 166 59.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-41 175.6 166 59.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-40 172.2 166 58.4
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 8.4e-39 166.0 131 59.5
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.4e-38 164.5 324 32.4
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.0e-32 144.8 495 25.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-27 127.5 213 38.0
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.8e-26 124.4 87 64.4
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 3.1e-25 120.9 76 65.8
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 6.9e-25 119.8 85 61.2
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.2e-21 109.0 91 54.9
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-20 105.1 184 38.6
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-18 99.0 166 41.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.3e-18 99.0 53 75.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 7.4e-11 73.2 44 65.9


User provided reference genes

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