Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.3e-272 942.6 534 100.0
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 3.5e-228 795.0 521 90.4
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 8.8e-224 780.4 611 77.7
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 9.2e-197 690.6 511 80.6
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.5e-122 444.1 569 53.4
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.0e-122 443.7 546 53.3
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.7e-122 442.2 538 55.9
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 7.4e-122 441.8 543 54.5
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.7e-121 439.5 550 59.3
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.7e-121 439.5 550 59.3
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.3e-118 431.0 534 55.6
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.7e-118 430.6 526 54.9
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 3.2e-117 426.4 532 58.3
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 8.0e-116 421.8 541 53.2
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.1e-114 417.9 526 53.2
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 1.1e-114 417.9 534 56.4
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.0e-114 417.2 548 58.0
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 2.6e-114 416.8 535 51.2
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 3.3e-114 416.4 548 58.0
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 9.7e-114 414.8 550 54.0
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 9.7e-114 414.8 543 50.6
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 2.8e-113 413.3 536 51.7
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 6.3e-113 412.1 526 53.0
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 8.2e-113 411.8 526 52.9
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 3.1e-112 409.8 536 50.4
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.1e-112 409.8 505 52.5
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 5.3e-112 409.1 541 49.9
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 9.1e-112 408.3 528 50.8
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 1.2e-111 407.9 551 49.4
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.2e-111 407.9 540 51.9
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.6e-111 407.5 547 54.7
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 2.0e-111 407.1 540 49.3
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 3.5e-111 406.4 540 50.9
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.2e-110 403.7 540 51.7
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 6.5e-110 402.1 522 54.6
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.1e-109 401.4 538 48.9
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 4.2e-109 399.4 526 49.2
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 7.2e-109 398.7 525 49.3
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 3.6e-108 396.4 525 49.0
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.7e-108 396.0 553 50.8
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 6.1e-108 395.6 529 55.4
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 8.0e-108 395.2 525 48.8
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 4.0e-107 392.9 537 49.3
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 8.8e-107 391.7 542 49.1
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.2e-106 391.3 555 47.9
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.2e-106 391.3 523 48.4
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 3.7e-105 386.3 549 48.3
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 6.3e-105 385.6 526 49.2
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 2.4e-104 383.6 505 49.9
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.1e-104 383.3 538 48.1
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 5.3e-104 382.5 511 51.7
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 9.1e-104 381.7 538 48.0
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 9.1e-104 381.7 524 48.7
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.0e-103 380.6 514 50.0
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 5.0e-102 375.9 516 49.0
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 6.5e-102 375.6 502 47.8
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 4.2e-101 372.9 434 55.3
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.2e-101 372.9 509 47.7
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.2e-100 371.3 543 47.1
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.6e-100 370.9 544 46.7
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 2.1e-100 370.5 521 48.4
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 2.7e-100 370.2 537 46.9
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 6.1e-100 369.0 542 48.2
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 4.0e-99 366.3 554 45.1
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 4.0e-99 366.3 502 55.2
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.2e-98 364.8 511 47.9
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 2.2e-97 360.5 489 48.3
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 8.3e-97 358.6 432 59.7
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.1e-96 358.2 524 46.9
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 2.4e-96 357.1 539 45.8
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 3.1e-96 356.7 492 48.6
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 7.0e-96 355.5 484 49.6
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.2e-95 354.8 537 46.7
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.6e-95 354.4 490 47.3
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.6e-95 354.4 527 47.2
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 5.9e-95 352.4 529 45.9
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.0e-94 351.7 482 48.5
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.0e-94 351.7 482 48.5
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 3.8e-94 349.7 490 47.3
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 3.8e-94 349.7 490 47.3
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.5e-93 347.1 498 46.6
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.6e-92 344.4 536 44.2
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.1e-92 344.0 529 45.2
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 2.1e-92 344.0 577 43.0
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 4.7e-92 342.8 508 46.7
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 6.8e-91 339.0 485 48.2
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 9.8e-90 335.1 524 45.6
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 6.3e-89 332.4 478 45.2
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 8.3e-89 332.0 532 43.2
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 4.5e-87 326.2 315 58.4
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 5.0e-86 322.8 518 44.6
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 9.5e-85 318.5 519 43.2
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 5.8e-82 309.3 513 42.1
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.4e-80 303.9 403 47.9
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 8.6e-78 295.4 602 38.4
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 2.1e-76 290.8 237 68.8
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.3e-75 287.3 301 56.1
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 7.0e-72 275.8 626 35.3
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.3e-70 270.8 279 57.7
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.0e-62 245.4 330 47.6
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.1e-61 241.9 253 57.7
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 2.8e-60 237.3 316 46.5
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 7.6e-58 229.2 249 57.8
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.3e-52 211.8 312 46.5
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.6e-52 211.5 311 46.6
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 7.6e-50 202.6 347 39.2
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.3e-48 195.7 219 52.1
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 9.6e-45 185.7 273 49.1
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.6e-39 168.3 263 43.7
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.5e-37 161.8 180 51.7
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.7e-36 157.1 292 39.7
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 3.1e-35 154.1 140 62.1
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 4.0e-35 153.7 129 62.8
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 5.5e-32 143.3 141 56.7
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.1e-29 135.6 94 76.6
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 2.1e-28 131.3 94 75.5
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 4.0e-27 127.1 305 38.4
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 1.9e-21 108.2 184 40.8
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 3.4e-18 97.4 346 26.6
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.2e-16 90.9 127 43.3
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.0e-14 85.9 138 44.2
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.4e-14 85.5 139 44.6
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 3.1e-11 74.3 67 56.7
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 1.5e-10 72.0 133 39.8
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 6.5e-09 66.6 70 52.9
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 2.5e-08 64.7 74 50.0
Aa31LG7G5080 Aethionema arabicum HOM05D000032 ORTHO05D005217 3.0e-06 57.8 104 35.6
FAN08G3167 Fragaria x ananassa HOM05D000032 ORTHO05D005217 5.1e-06 57.0 140 31.4
FvH4_5g26270 Fragaria vesca HOM05D000032 ORTHO05D005217 6.7e-06 56.6 140 31.4


User provided reference genes

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