Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.0e-77 292.7 190 100.0
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 4.8e-39 165.2 210 65.2
MELO3C024878.2 Cucumis melo HOM05D006882 ORTHO05D008688 4.0e-38 162.2 147 81.6
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 1.8e-25 120.2 71 83.1
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.1e-14 84.3 130 43.1
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 7.7e-13 78.2 77 53.2
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.0e-12 77.8 65 58.5
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 1.3e-12 77.4 53 69.8
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.7e-12 77.0 72 55.6
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 1.7e-12 77.0 70 55.7
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 2.2e-12 76.6 69 55.1
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 3.8e-12 75.9 65 56.9
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 5.0e-12 75.5 72 54.2
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 5.0e-12 75.5 81 49.4
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 6.5e-12 75.1 70 54.3
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 8.5e-12 74.7 70 54.3
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 8.5e-12 74.7 59 64.4
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 8.5e-12 74.7 65 56.9
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.1e-11 74.3 77 50.6
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.1e-11 74.3 74 51.4
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 1.1e-11 74.3 63 58.7
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 1.1e-11 74.3 47 70.2
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 1.9e-11 73.6 45 73.3
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.9e-11 73.6 74 51.4
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.9e-11 73.6 63 60.3
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.5e-11 73.2 71 53.5
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 2.5e-11 73.2 71 53.5
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.5e-11 73.2 45 71.1
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.5e-11 73.2 56 60.7
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 3.2e-11 72.8 45 71.1
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 3.2e-11 72.8 73 49.3
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 4.2e-11 72.4 54 64.8
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.2e-11 72.4 71 53.5
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 4.2e-11 72.4 46 73.9
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 4.2e-11 72.4 70 51.4
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 5.5e-11 72.0 55 63.6
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 5.5e-11 72.0 71 54.9
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 5.5e-11 72.0 46 71.7
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 7.2e-11 71.6 45 71.1
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 7.2e-11 71.6 64 56.2
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 9.4e-11 71.2 54 63.0
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 9.4e-11 71.2 45 71.1
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 9.4e-11 71.2 61 60.7
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.2e-10 70.9 52 63.5
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.2e-10 70.9 45 73.3
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.6e-10 70.5 70 52.9
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.6e-10 70.5 50 64.0
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.1e-10 70.1 54 61.1
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 2.1e-10 70.1 72 50.0
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 2.1e-10 70.1 55 61.8
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 2.7e-10 69.7 68 51.5
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 3.6e-10 69.3 55 61.8
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 4.7e-10 68.9 50 70.0
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 6.1e-10 68.6 47 66.0
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 7.9e-10 68.2 62 58.1
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 7.9e-10 68.2 46 65.2
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 7.9e-10 68.2 48 62.5
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 7.9e-10 68.2 47 66.0
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.4e-09 67.4 40 75.0
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.4e-09 67.4 50 66.0
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.8e-09 67.0 47 70.2
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.3e-09 66.6 47 68.1
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 2.3e-09 66.6 43 67.4
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 3.0e-09 66.2 62 56.5
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 3.0e-09 66.2 43 65.1
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 3.0e-09 66.2 42 66.7
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 3.0e-09 66.2 42 66.7
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 3.9e-09 65.9 48 60.4
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.9e-09 65.9 48 60.4
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.9e-09 65.9 48 60.4
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 5.1e-09 65.5 40 70.0
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 5.1e-09 65.5 40 70.0
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.1e-09 65.5 47 68.1
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 5.1e-09 65.5 74 50.0
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 6.7e-09 65.1 42 66.7
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 8.8e-09 64.7 38 71.1
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 8.8e-09 64.7 38 71.1
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 8.8e-09 64.7 38 71.1
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 8.8e-09 64.7 38 71.1
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 8.8e-09 64.7 47 66.0
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 8.8e-09 64.7 47 66.0
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.1e-08 64.3 48 60.4
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 1.1e-08 64.3 55 58.2
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 1.5e-08 63.9 44 68.2
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 1.5e-08 63.9 40 70.0
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.5e-08 63.9 45 68.9
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 1.5e-08 63.9 63 52.4
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 2.0e-08 63.5 49 63.3
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 3.3e-08 62.8 40 70.0
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 3.3e-08 62.8 45 66.7
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 5.7e-08 62.0 55 54.5
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 7.4e-08 61.6 48 64.6
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 7.4e-08 61.6 63 52.4
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 9.7e-08 61.2 68 48.5
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 1.3e-07 60.8 43 60.5
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.3e-07 60.8 54 55.6
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 1.3e-07 60.8 56 58.9
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.1e-06 57.8 46 60.9
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.1e-06 57.8 57 57.9
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 1.1e-06 57.8 57 57.9
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 1.8e-06 57.0 47 61.7
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.8e-06 57.0 60 48.3
Sed0000045 Sechium edule HOM05D006882 ORTHO05D008688 2.4e-06 56.6 128 43.0
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 7.0e-06 55.1 34 70.6
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 9.1e-06 54.7 45 62.2


User provided reference genes

Program Settings