Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 5.3e-93 344.4 175 100.0
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 3.2e-90 335.1 175 97.1
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 5.1e-88 327.8 175 94.9
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 3.1e-77 292.0 173 84.4
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 5.5e-66 254.6 175 74.9
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.7e-65 252.3 172 76.7
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.7e-65 252.3 172 76.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.7e-65 251.5 178 73.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 6.1e-65 251.1 172 77.9
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 8.0e-65 250.8 173 76.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.8e-64 249.6 175 74.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.9e-64 248.4 178 76.4
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.9e-64 248.4 175 73.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.5e-63 246.5 176 74.4
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.0e-63 246.1 179 73.7
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.6e-63 245.7 191 71.7
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 9.7e-63 243.8 178 72.5
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 9.7e-63 243.8 180 71.7
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.7e-62 241.9 168 75.0
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.7e-62 241.9 176 73.3
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.4e-61 240.0 175 72.0
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.8e-61 239.6 201 65.2
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 3.1e-61 238.8 184 69.6
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 3.1e-61 238.8 184 69.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 4.1e-61 238.4 178 70.2
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 4.1e-61 238.4 176 72.7
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 7.0e-61 237.7 182 72.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.1e-61 237.3 183 72.1
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.6e-60 236.5 175 71.4
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.0e-60 236.1 172 72.1
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.6e-60 235.7 176 74.4
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.5e-60 235.3 173 72.3
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.0e-59 233.8 175 70.9
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.7e-59 233.0 180 72.2
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.2e-59 232.6 185 67.6
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.9e-59 232.3 186 66.7
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.9e-59 232.3 171 71.3
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.8e-59 231.9 184 70.1
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 3.8e-59 231.9 181 72.9
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 5.0e-59 231.5 173 70.5
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 8.5e-59 230.7 177 69.5
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.1e-58 230.3 180 68.9
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.9e-58 229.6 195 67.7
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.5e-58 229.2 174 67.2
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.5e-58 228.0 174 71.3
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.5e-58 228.0 174 71.3
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.5e-58 228.0 174 71.3
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.5e-58 228.0 171 70.2
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 9.4e-58 227.3 180 68.3
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 9.4e-58 227.3 202 65.8
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 9.4e-58 227.3 204 60.8
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.6e-57 226.5 177 66.1
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.1e-57 226.1 172 69.2
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.1e-57 226.1 174 69.0
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 4.7e-57 224.9 176 68.8
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 6.1e-57 224.6 179 64.2
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 6.1e-57 224.6 173 69.4
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.0e-56 223.8 177 70.1
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.4e-56 223.4 177 69.5
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.8e-56 223.0 179 69.8
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.8e-56 223.0 177 69.5
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.0e-56 222.2 172 69.2
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 3.0e-56 222.2 130 83.8
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.2e-56 221.5 189 65.6
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 5.2e-56 221.5 173 69.4
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.2e-55 220.3 179 67.0
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.0e-55 219.5 172 67.4
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.4e-55 218.8 180 67.2
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.4e-55 218.4 174 66.1
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 4.4e-55 218.4 173 68.2
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 5.7e-55 218.0 169 69.2
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 9.8e-55 217.2 173 65.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 9.8e-55 217.2 187 64.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.7e-54 216.5 188 64.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-54 216.1 174 64.9
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-54 216.1 174 65.5
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.8e-54 215.7 182 63.7
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.8e-54 215.7 182 63.7
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.8e-54 215.7 182 63.7
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 3.7e-54 215.3 193 61.1
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 8.3e-54 214.2 184 64.1
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 8.3e-54 214.2 177 63.8
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.1e-53 213.8 175 66.9
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.4e-53 213.4 203 59.1
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.8e-53 213.0 190 60.5
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.8e-53 213.0 181 64.1
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.8e-53 213.0 181 64.1
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.4e-53 212.6 175 66.9
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 9.1e-53 210.7 173 64.2
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.6e-52 209.9 157 73.2
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 3.5e-52 208.8 135 79.3
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 5.9e-52 208.0 176 65.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 7.7e-52 207.6 175 65.1
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.9e-51 205.7 187 59.4
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 6.5e-51 204.5 178 62.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 8.5e-51 204.1 179 62.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.5e-50 202.6 175 64.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.5e-50 202.6 175 64.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 5.5e-50 201.4 184 62.0
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 7.2e-50 201.1 133 77.4
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.2e-49 200.3 179 63.1
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.1e-49 199.5 175 57.7
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 3.6e-49 198.7 180 61.1
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.0e-48 197.2 181 58.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.0e-48 197.2 171 59.6
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.8e-48 194.1 173 63.0
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 3.4e-47 192.2 181 59.7
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 4.4e-47 191.8 190 58.4
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.7e-46 188.7 120 75.8
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 8.3e-46 187.6 184 57.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 9.1e-45 184.1 177 58.8
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.9e-44 181.4 174 62.1
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 3.8e-43 178.7 152 63.8
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.5e-42 176.8 108 84.3
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 3.6e-41 172.2 138 70.3
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.0e-41 171.0 176 57.4
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 5.2e-40 168.3 145 66.9
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.9e-38 162.5 132 61.4
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 4.9e-38 161.8 189 49.7
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 2.4e-37 159.5 188 47.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.2e-37 159.1 91 84.6
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.3e-35 152.9 132 60.6
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 2.3e-32 142.9 102 67.6
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.9e-30 136.0 101 67.3
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 6.4e-30 134.8 112 58.0
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 6.4e-30 134.8 101 66.3
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 8.3e-30 134.4 128 63.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.4e-29 132.9 108 61.1
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.6e-28 130.2 98 69.4
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.5e-28 129.0 107 58.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.7e-27 126.7 106 62.3
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.3e-27 126.3 107 56.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 6.6e-27 124.8 102 63.7
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.3e-26 122.1 115 59.1
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 9.5e-26 120.9 172 43.6
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.8e-24 116.7 126 54.8
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.5e-23 113.6 94 57.4
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.4e-23 112.1 103 55.3
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 4.4e-23 112.1 103 57.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-21 107.5 106 52.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.4e-21 106.3 88 68.2
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 7.1e-21 104.8 98 52.0
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-19 100.5 80 60.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.5e-18 97.1 71 63.4
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 2.5e-18 96.3 152 46.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 4.3e-18 95.5 103 45.6
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 9.5e-18 94.4 64 76.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.6e-17 92.4 67 71.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 6.2e-17 91.7 101 50.5
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.8e-16 88.2 98 41.8
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.2e-15 87.4 94 50.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.9e-13 80.1 129 36.4


User provided reference genes

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