Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 0.0e+00 2264.2 1138 100.0
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.9e-311 1071.6 1080 59.6
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 1.2e-124 452.2 268 88.8
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 7.9e-105 386.3 1247 30.0
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 3.0e-104 384.4 1254 29.0
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 8.2e-102 376.3 1245 29.6
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 2.2e-78 298.5 1216 27.2
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.8e-77 295.4 1105 28.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.6e-76 292.4 1037 28.4
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 4.5e-76 290.8 1244 27.3
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.7e-76 290.0 1230 26.9
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.7e-75 288.9 1249 27.5
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.5e-75 286.6 1255 26.1
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.5e-74 285.8 1002 28.9
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.2e-73 282.7 1248 27.1
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 9.7e-71 273.1 1078 28.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 4.8e-70 270.8 1130 27.6
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 3.6e-65 254.6 1218 28.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 2.0e-63 248.8 1157 27.3
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.0e-63 248.8 1042 28.8
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 2.2e-62 245.4 1153 26.2
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.4e-61 242.7 1032 28.5
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.6e-60 239.2 1121 25.8
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 4.5e-60 237.7 1151 26.9
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.0e-59 236.5 1130 27.0
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 6.5e-59 233.8 1214 26.0
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 8.6e-59 233.4 1058 28.4
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 9.5e-58 229.9 1207 25.8
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 7.5e-55 220.3 1081 26.6
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.3e-54 219.5 952 27.9
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 4.1e-53 214.5 1219 25.6
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 5.4e-53 214.2 959 27.1
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 2.0e-52 212.2 1072 27.1
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 4.5e-52 211.1 1040 28.0
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.3e-51 209.5 1029 28.4
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.7e-51 209.1 1071 27.2
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 7.3e-50 203.8 914 25.4
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.7e-47 194.1 1249 25.1
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 5.7e-47 194.1 956 26.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 7.5e-47 193.7 981 26.6
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.3e-43 182.2 941 26.1
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.9e-43 181.4 1002 25.9
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.9e-43 181.4 1197 26.2
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.6e-39 168.7 708 28.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.4e-39 167.9 542 28.2
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.7e-38 166.0 1004 26.8
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 8.3e-38 163.7 1019 26.1
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.6e-36 159.5 1020 24.2
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.9e-34 152.5 1025 25.6
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.1e-32 146.7 1129 23.0
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 5.2e-32 144.4 1110 25.1
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.6e-28 132.9 994 24.1
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 3.0e-27 128.6 473 29.6
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 3.9e-27 128.3 1025 24.1
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 6.6e-27 127.5 999 24.2
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 8.6e-27 127.1 1078 24.5
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 4.3e-26 124.8 904 23.3
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 7.3e-26 124.0 525 26.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 8.1e-25 120.6 979 24.9
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 4.0e-24 118.2 1004 24.8
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.8e-24 117.5 981 25.2
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.2e-23 116.7 626 25.7
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 4.4e-23 114.8 1000 23.8
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 7.6e-23 114.0 315 31.4
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 9.9e-23 113.6 953 24.6
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.9e-22 112.1 717 24.7
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.1e-21 110.2 642 25.2
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.4e-21 109.8 646 25.9
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 4.1e-21 108.2 991 24.3
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 5.4e-21 107.8 987 23.9
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.2e-20 106.7 264 31.4
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 7.8e-20 104.0 371 29.6
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 3.9e-19 101.7 1015 23.3
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 3.9e-19 101.7 939 23.0
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 3.9e-19 101.7 939 23.0
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 2.5e-18 99.0 1073 21.8
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.3e-18 98.6 985 23.6
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 5.6e-18 97.8 230 34.3
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 7.3e-18 97.4 188 37.2
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.6e-17 96.3 985 23.6
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 2.1e-17 95.9 435 27.4
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 3.1e-16 92.0 720 22.6
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 6.9e-16 90.9 979 25.4
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.9e-16 90.9 182 36.3
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 2.6e-15 89.0 760 24.3
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.3e-14 86.7 801 24.7
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 2.2e-14 85.9 495 25.7
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.9e-14 85.5 691 23.9
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 2.9e-14 85.5 413 25.4
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.8e-14 85.1 379 25.3
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 8.4e-14 84.0 374 25.1
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.1e-13 83.6 410 26.3
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 1.4e-13 83.2 482 24.9
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 3.2e-13 82.0 570 24.0
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.2e-12 80.1 1121 22.2
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.6e-12 79.7 426 24.6
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 1.6e-12 79.7 411 24.3
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 2.1e-12 79.3 718 21.9
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.7e-12 79.0 481 24.1
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 3.5e-12 78.6 309 27.5
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 4.6e-12 78.2 410 24.4
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 4.6e-12 78.2 257 31.1
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.3e-11 75.9 556 24.1
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 3.9e-11 75.1 496 24.4
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 5.1e-11 74.7 183 31.1
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 6.6e-11 74.3 369 25.5
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.1e-10 73.6 250 28.8
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-10 73.6 250 28.8
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-10 73.6 250 28.8
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-10 73.6 186 31.7
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.5e-10 73.2 186 31.2
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.9e-10 72.8 367 24.5
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 7.3e-10 70.9 567 23.6
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 9.6e-10 70.5 183 31.1
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 9.6e-10 70.5 260 27.3
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.3e-09 70.1 419 24.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.3e-09 70.1 447 23.9
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.6e-09 69.7 567 23.3
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 3.6e-09 68.6 433 24.7
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 4.8e-09 68.2 415 23.9
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 4.8e-09 68.2 415 23.9
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 6.2e-09 67.8 187 29.9
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 6.2e-09 67.8 187 29.9
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.1e-08 67.0 288 26.0
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.8e-08 66.2 442 21.7
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 2.4e-08 65.9 383 23.8
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 2.4e-08 65.9 383 23.8
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-08 65.5 424 22.6
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-08 65.5 254 26.8
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 3.1e-08 65.5 254 26.8
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 5.3e-08 64.7 314 24.5
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 9.0e-08 63.9 348 23.9
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 9.0e-08 63.9 551 23.6
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 3.4e-07 62.0 287 28.9
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.7e-06 59.7 877 21.7
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 8.4e-06 57.4 1057 19.7
Os10g0537300 Oryza sativa ssp. japonica HOM05D033058 ORTHO05D037190 8.4e-06 57.4 427 22.0


User provided reference genes

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