Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 0.0e+00 1266.5 622 100.0
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 0.0e+00 1165.2 622 92.9
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 4.6e-309 1063.9 621 85.8
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 4.7e-277 957.6 622 76.8
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 7.5e-166 588.2 621 51.4
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 3.8e-162 575.9 676 45.9
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 8.6e-162 574.7 628 48.7
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 5.7e-150 535.4 622 46.3
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 6.0e-147 525.4 586 48.1
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.6e-144 516.2 630 44.6
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 4.7e-144 515.8 608 48.5
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 5.4e-140 502.3 622 45.2
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 4.6e-139 499.2 590 46.6
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 1.0e-138 498.0 604 45.9
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 1.5e-137 494.2 626 45.5
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 3.3e-137 493.0 589 46.5
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 5.6e-137 492.3 623 43.5
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 5.6e-137 492.3 646 43.7
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.2e-136 491.1 603 44.4
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 3.6e-136 489.6 634 44.3
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 8.1e-136 488.4 584 45.7
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.8e-135 487.3 632 44.1
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 2.3e-135 486.9 611 46.6
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 1.5e-134 484.2 604 44.5
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 4.4e-134 482.6 616 43.7
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 1.3e-133 481.1 603 43.9
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 2.2e-133 480.3 636 43.2
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 6.4e-133 478.8 586 47.3
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.4e-132 477.6 583 46.7
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.9e-132 477.2 586 46.9
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 2.4e-132 476.9 623 43.3
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 1.0e-130 471.5 609 43.5
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.5e-129 466.8 621 43.5
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 3.3e-129 466.5 632 44.0
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 3.3e-129 466.5 630 43.7
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 9.5e-129 464.9 678 41.7
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 6.2e-128 462.2 585 44.3
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 6.2e-128 462.2 627 43.1
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 1.8e-127 460.7 591 45.9
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 1.3e-125 454.5 604 45.0
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 1.1e-124 451.4 626 41.9
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 2.4e-124 450.3 712 39.2
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 4.1e-124 449.5 620 42.1
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 9.2e-124 448.4 613 41.8
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 1.3e-122 444.5 623 42.4
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.5e-121 441.0 634 41.6
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 2.5e-121 440.3 608 41.6
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 1.6e-120 437.6 608 43.3
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 4.7e-120 436.0 625 42.1
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.8e-119 434.1 612 41.3
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.4e-119 433.7 593 41.3
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 2.4e-119 433.7 627 40.2
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 5.8e-118 429.1 569 43.1
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 8.4e-117 425.2 610 42.0
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 8.4e-117 425.2 684 38.9
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 3.2e-116 423.3 600 41.2
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.0e-114 418.3 625 38.9
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 3.0e-114 416.8 637 42.1
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 4.3e-113 412.9 580 42.6
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 4.8e-112 409.5 515 44.7
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 1.4e-111 407.9 605 40.5
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 3.1e-111 406.8 587 40.4
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 1.5e-105 387.9 625 37.4
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 4.8e-104 382.9 633 38.1
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.1e-103 380.2 601 38.9
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 2.4e-100 370.5 637 36.7
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 7.4e-97 359.0 596 36.6
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 2.4e-95 354.0 613 37.8
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 7.6e-94 349.0 458 43.2
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 1.0e-93 348.6 442 44.1
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 2.9e-93 347.1 555 37.7
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 7.1e-92 342.4 509 39.7
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 5.1e-90 336.3 621 34.1
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 1.1e-89 335.1 509 38.3
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.6e-86 323.9 538 39.0
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 5.9e-86 322.8 604 35.3
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 5.0e-85 319.7 587 35.6
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 8.5e-85 318.9 689 33.8
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 7.2e-84 315.8 576 35.6
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 2.7e-83 313.9 449 41.0
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 4.6e-83 313.2 596 35.9
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 4.6e-83 313.2 622 34.6
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 5.1e-82 309.7 500 38.2
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 5.1e-82 309.7 658 34.2
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 9.7e-81 305.4 600 33.3
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 9.7e-81 305.4 286 53.8
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 2.2e-80 304.3 587 34.8
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.8e-79 301.2 619 35.1
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.1e-79 300.4 594 34.8
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 6.9e-79 299.3 603 33.5
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 2.0e-78 297.7 578 34.4
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 5.9e-78 296.2 419 41.5
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 2.2e-77 294.3 614 34.7
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 1.9e-76 291.2 585 35.4
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.9e-76 291.2 574 34.7
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 1.6e-75 288.1 584 35.1
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 2.7e-75 287.3 617 34.2
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 4.7e-75 286.6 585 34.9
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 6.1e-75 286.2 560 33.4
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 1.1e-73 282.0 616 33.6
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 9.1e-71 272.3 478 36.0
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 1.2e-70 271.9 581 32.4
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 9.4e-68 262.3 342 43.6
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 3.9e-66 256.9 238 53.4
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 6.7e-66 256.1 549 32.6
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.1e-65 255.4 263 47.9
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 1.1e-65 255.4 572 32.2
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.5e-65 255.0 425 39.1
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.4e-63 248.4 502 32.1
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 1.1e-60 238.8 491 33.2
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 6.3e-56 223.0 217 47.5
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 5.9e-54 216.5 382 36.6
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 7.7e-54 216.1 444 33.3
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 2.6e-49 201.1 426 32.6
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 9.8e-49 199.1 449 33.2
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 1.7e-48 198.4 297 41.1
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 1.9e-44 184.9 546 29.5
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 1.0e-42 179.1 319 37.0
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 4.4e-41 173.7 232 41.4
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 9.8e-41 172.6 557 26.2
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 1.1e-39 169.1 152 54.6
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 1.1e-39 169.1 183 50.8
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 2.0e-38 164.9 173 45.7
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 2.8e-35 154.5 581 26.0
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 3.6e-35 154.1 232 38.4
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 1.4e-34 152.1 155 52.3
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 4.4e-33 147.1 157 45.9
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 7.5e-33 146.4 165 46.7
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 9.8e-33 146.0 269 36.8
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 2.2e-32 144.8 539 27.8
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 9.5e-28 129.4 445 25.8
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 4.0e-26 124.0 196 39.3
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 1.3e-21 109.0 370 27.3
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 3.0e-21 107.8 139 42.4
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 9.9e-17 92.8 116 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 1.3e-16 92.4 441 23.4
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 7.8e-14 83.2 92 41.3
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 3.0e-13 81.3 105 47.6
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 3.3e-12 77.8 91 44.0
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 8.4e-08 63.2 98 39.8
Atru.chr2.139 Acer truncatum HOM05D004843 ORTHO05D005833 1.1e-07 62.8 124 37.9
Haze_09369 Corylus avellana HOM05D004843 ORTHO05D164047 3.2e-07 61.2 44 52.3
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 5.4e-07 60.5 70 47.1


User provided reference genes

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