Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.9e-242 842.0 417 100.0
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 3.6e-225 784.6 419 94.0
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 2.2e-185 652.5 423 80.4
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 8.6e-134 481.1 424 63.4
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.9e-57 226.9 403 41.9
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 9.8e-53 211.8 453 40.0
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 9.1e-51 205.3 409 38.6
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 4.5e-50 203.0 414 40.8
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.9e-49 200.3 410 40.0
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 4.2e-48 196.4 361 40.7
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 8.0e-47 192.2 446 36.8
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 1.8e-46 191.0 438 36.8
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 1.8e-46 191.0 444 37.6
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.3e-46 190.7 410 39.3
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 6.8e-46 189.1 411 40.1
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 4.9e-44 183.0 396 37.9
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 8.3e-44 182.2 439 37.1
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 1.1e-43 181.8 469 36.5
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 1.4e-43 181.4 436 36.7
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 4.1e-43 179.9 439 34.2
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.0e-42 177.6 410 38.5
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 3.5e-42 176.8 360 39.4
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.9e-42 176.0 428 36.7
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 3.8e-41 173.3 441 35.8
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 6.6e-41 172.6 436 36.0
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 8.6e-41 172.2 442 35.5
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.1e-40 171.8 425 36.9
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.5e-40 171.4 438 36.1
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 3.3e-40 170.2 417 36.5
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.6e-39 166.8 430 35.6
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 8.0e-39 165.6 434 35.0
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.4e-38 164.9 449 33.6
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.8e-38 164.5 442 35.1
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.0e-38 163.7 442 34.8
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 8.9e-38 162.2 441 34.5
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 1.5e-37 161.4 437 34.6
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.0e-37 161.0 413 36.6
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 3.4e-37 160.2 434 36.4
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.7e-36 157.9 413 34.9
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 2.2e-36 157.5 448 36.2
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.9e-36 157.1 418 34.9
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 4.9e-36 156.4 441 35.8
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.1e-35 155.2 417 35.0
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 2.4e-35 154.1 419 36.3
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.6e-34 151.4 443 35.0
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 2.7e-34 150.6 408 35.0
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 3.5e-34 150.2 417 35.0
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 6.0e-34 149.4 409 36.4
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 1.7e-33 147.9 359 35.9
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 1.7e-33 147.9 443 35.0
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.2e-31 141.7 441 32.7
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 1.6e-31 141.4 415 35.4
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.4e-30 138.3 447 32.7
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 3.1e-30 137.1 466 31.1
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 4.0e-30 136.7 265 41.9
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 6.8e-30 136.0 425 34.1
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.5e-29 134.8 434 32.5
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.0e-29 134.4 437 31.6
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 3.4e-29 133.7 405 32.6
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 5.8e-29 132.9 413 34.9
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 1.4e-27 128.3 431 32.9
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.9e-27 127.9 450 31.6
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 1.6e-26 124.8 271 38.0
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 3.5e-26 123.6 402 31.6
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 6.0e-26 122.9 443 32.7
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.7e-25 121.3 432 32.6
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.6e-25 119.4 421 34.2
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 8.6e-25 119.0 345 35.1
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 3.3e-24 117.1 363 33.1
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 7.3e-24 115.9 418 33.3
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 9.5e-24 115.5 417 32.6
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 9.5e-24 115.5 436 32.3
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.2e-23 115.2 222 41.0
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 1.2e-23 115.2 443 31.8
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 1.8e-22 111.3 363 35.0
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 5.2e-22 109.8 443 30.2
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 8.9e-22 109.0 423 31.7
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.5e-21 108.2 417 30.9
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 2.0e-21 107.8 415 29.9
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 3.4e-21 107.1 396 30.8
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 3.4e-21 107.1 419 31.0
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 7.5e-21 105.9 417 31.2
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.3e-20 105.1 426 30.0
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.7e-20 104.8 405 33.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 6.4e-20 102.8 467 28.7
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.9e-19 101.3 426 31.9
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 5.4e-19 99.8 439 30.8
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 9.2e-19 99.0 433 30.7
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 9.2e-19 99.0 277 33.6
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 6.0e-18 96.3 294 31.3
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 7.8e-18 95.9 471 28.2
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 2.3e-17 94.4 430 29.3
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.9e-16 91.3 426 30.3
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.8e-15 87.4 402 31.1
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.7e-15 86.7 237 36.3
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 1.4e-14 85.1 265 34.7
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.4e-14 85.1 406 28.1
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 2.4e-14 84.3 438 27.4
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 8.9e-14 82.4 248 34.3
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 6.4e-12 76.3 431 26.5
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 6.4e-12 76.3 271 32.8
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 2.4e-11 74.3 480 26.2
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 1.6e-10 71.6 245 31.4
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.7e-10 70.9 401 28.2
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 3.5e-10 70.5 430 27.9
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 6.0e-10 69.7 334 29.6
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 7.8e-10 69.3 306 28.1
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 7.8e-10 69.3 396 26.8
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 1.0e-09 68.9 440 26.4
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 1.0e-09 68.9 336 28.6
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.3e-09 67.8 412 28.4
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 6.6e-09 66.2 333 29.4
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 8.7e-09 65.9 407 28.7
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 8.7e-09 65.9 333 29.4
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 3.3e-08 63.9 247 29.6
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.2e-07 62.0 453 25.8
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.6e-07 61.6 413 25.4
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 3.6e-07 60.5 432 26.6
MBI06_g40465_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 4.7e-07 60.1 98 45.9
MBI06_g46086_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 1.1e-06 58.9 118 39.8
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.1e-06 58.9 217 30.4
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.4e-06 58.5 275 28.7
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 1.8e-06 58.2 229 30.1
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.1e-06 57.4 332 28.9
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.0e-06 57.0 268 29.1


User provided reference genes

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