Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.7e-49 198.4 100 100.0
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.6e-36 153.7 100 79.0
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 3.3e-31 138.3 100 71.0
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.0e-25 117.5 97 61.9
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.9e-23 112.5 97 57.7
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 3.1e-21 105.1 96 60.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 3.4e-20 101.7 73 64.4
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 3.4e-20 101.7 100 58.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 7.6e-20 100.5 87 62.1
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.3e-19 99.8 101 51.5
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 2.2e-19 99.0 99 58.6
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.8e-19 98.2 103 56.3
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.4e-18 96.3 103 53.4
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.4e-18 96.3 106 51.9
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.9e-18 95.9 102 52.9
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.9e-18 95.9 102 52.9
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.2e-18 94.7 93 54.8
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 9.3e-18 93.6 84 57.1
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 9.3e-18 93.6 99 51.5
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.6e-17 92.8 102 52.0
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.6e-17 92.8 101 49.5
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.7e-17 92.0 92 53.3
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.8e-16 89.4 77 59.7
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 2.3e-16 89.0 91 51.6
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 2.3e-16 89.0 91 51.6
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.0e-16 88.6 94 52.1
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 5.1e-16 87.8 84 61.9
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 5.1e-16 87.8 75 57.3
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 8.7e-16 87.0 93 54.8
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 8.7e-16 87.0 86 54.7
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.1e-15 86.7 96 50.0
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 2.5e-15 85.5 89 53.9
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.3e-15 85.1 92 54.3
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 7.4e-15 84.0 85 55.3
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.6e-14 82.8 92 52.2
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 2.1e-14 82.4 93 52.7
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.8e-14 82.0 89 55.1
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.8e-14 82.0 92 54.3
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 2.8e-14 82.0 90 50.0
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.7e-14 81.6 72 58.3
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 3.7e-14 81.6 69 59.4
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 4.8e-14 81.3 88 58.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 6.2e-14 80.9 94 50.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.1e-13 80.1 92 48.9
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.4e-13 79.7 75 60.0
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.4e-13 79.7 81 55.6
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.8e-13 79.3 93 49.5
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.4e-13 79.0 88 55.7
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 5.3e-13 77.8 74 50.0
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 5.3e-13 77.8 93 44.1
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.0e-13 77.0 82 50.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.2e-12 76.6 98 49.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.2e-12 76.6 95 45.3
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.5e-12 76.3 87 52.9
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.5e-12 76.3 78 50.0
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.0e-12 75.9 92 43.5
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.0e-12 75.9 81 46.9
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 2.6e-12 75.5 83 43.4
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.4e-12 75.1 81 50.6
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 3.4e-12 75.1 72 48.6
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.5e-12 74.7 94 43.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.5e-12 74.7 69 55.1
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 5.8e-12 74.3 102 47.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 5.8e-12 74.3 95 42.1
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 7.6e-12 73.9 98 46.9
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 7.6e-12 73.9 98 46.9
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 7.6e-12 73.9 93 50.5
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.0e-11 73.6 62 59.7
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.0e-11 73.6 87 46.0
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.3e-11 73.2 98 45.9
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.7e-11 72.8 88 45.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.7e-11 72.8 70 50.0
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.7e-11 72.8 93 45.2
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.2e-11 72.4 106 39.6
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.2e-11 72.4 72 47.2
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-11 72.4 88 45.5
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.9e-11 72.0 94 43.6
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.9e-11 72.0 81 45.7
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.9e-11 72.0 94 46.8
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.8e-11 71.6 85 51.8
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.8e-11 71.6 45 68.9
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 4.9e-11 71.2 55 54.5
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.9e-11 71.2 65 56.9
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 6.5e-11 70.9 94 46.8
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.5e-11 70.9 80 46.2
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 6.5e-11 70.9 84 40.5
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 6.5e-11 70.9 75 45.3
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 8.4e-11 70.5 77 48.1
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 8.4e-11 70.5 94 44.7
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 8.4e-11 70.5 65 52.3
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 8.4e-11 70.5 75 49.3
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.4e-10 69.7 95 37.9
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.9e-10 69.3 81 40.7
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 2.5e-10 68.9 71 49.3
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.2e-10 68.6 77 46.8
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 3.2e-10 68.6 90 43.3
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 4.2e-10 68.2 94 46.8
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 5.5e-10 67.8 59 55.9
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 5.5e-10 67.8 48 64.6
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 5.5e-10 67.8 81 48.1
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 7.1e-10 67.4 100 45.0
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 7.1e-10 67.4 61 50.8
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.2e-09 66.6 88 44.3
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.2e-09 66.6 68 52.9
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.2e-09 66.6 72 54.2
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.2e-09 66.6 78 47.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.6e-09 66.2 79 49.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.6e-09 66.2 88 50.0
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.1e-09 65.9 72 50.0
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.1e-09 65.9 67 59.7
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.1e-09 65.9 74 45.9
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 2.7e-09 65.5 49 59.2
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 2.7e-09 65.5 68 51.5
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.7e-09 65.5 98 41.8
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 2.7e-09 65.5 98 41.8
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.5e-09 65.1 49 61.2
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 4.6e-09 64.7 88 44.3
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 6.0e-09 64.3 67 50.7
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.9e-09 63.9 68 51.5
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 7.9e-09 63.9 67 58.2
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 7.9e-09 63.9 80 42.5
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 7.9e-09 63.9 81 40.7
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.0e-08 63.5 64 51.6
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.0e-08 63.5 71 50.7
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.3e-08 63.2 71 50.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 1.8e-08 62.8 80 45.0
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 3.0e-08 62.0 72 47.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.1e-08 61.2 44 59.1
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 6.7e-08 60.8 83 43.4
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 8.7e-08 60.5 43 60.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.1e-07 60.1 79 45.6
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 1.5e-07 59.7 80 45.0
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-07 59.7 64 50.0
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.9e-07 59.3 40 65.0
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.5e-07 58.9 79 44.3
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.5e-07 58.9 79 44.3
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 2.5e-07 58.9 42 59.5
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 3.3e-07 58.5 82 42.7
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.3e-07 58.2 68 45.6
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 4.3e-07 58.2 89 39.3
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 9.6e-07 57.0 74 40.5
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.3e-06 56.6 97 41.2
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 8.2e-06 53.9 65 49.2


User provided reference genes

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