Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.8e-263 912.1 488 100.0
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.0e-258 894.0 488 98.4
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.5e-257 892.5 488 97.5
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 2.6e-246 855.1 489 94.1
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 3.4e-246 854.7 485 94.4
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 8.6e-210 733.8 506 78.5
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.6e-208 729.6 492 79.7
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.5e-206 723.0 502 78.5
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 6.0e-203 711.1 501 76.6
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.0e-202 710.3 499 75.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.3e-202 709.9 501 78.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 7.3e-201 704.1 500 77.2
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-199 700.3 519 72.8
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 9.0e-199 697.2 501 75.4
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-198 696.4 529 71.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.6e-198 695.7 499 76.0
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.3e-197 693.3 500 74.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 2.2e-197 692.6 497 76.1
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.9e-196 689.5 504 75.0
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.2e-195 686.8 491 76.6
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.6e-195 686.4 508 72.6
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 6.0e-195 684.5 501 75.6
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.0e-194 682.2 503 75.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-193 680.2 503 74.8
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.1e-193 680.2 504 75.2
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.3e-193 678.3 502 73.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.1e-192 676.0 493 75.7
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.8e-192 675.6 503 74.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.8e-191 672.9 499 73.5
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.4e-191 672.5 498 74.3
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.0e-191 671.8 494 73.5
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.0e-190 669.5 496 74.6
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 2.6e-190 669.1 502 73.5
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.8e-190 667.9 498 73.9
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 7.6e-190 667.5 497 74.6
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 7.6e-190 667.5 497 74.6
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.3e-189 666.8 498 74.1
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.8e-189 665.2 469 77.2
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.9e-188 662.9 493 74.2
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.9e-188 662.9 500 72.6
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 9.3e-188 660.6 499 72.5
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.2e-187 660.2 498 73.5
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.1e-187 659.4 502 72.7
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 4.6e-187 658.3 500 73.0
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.3e-186 656.8 492 74.0
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.8e-186 656.4 500 71.8
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.0e-186 655.6 497 73.4
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.9e-185 652.9 501 69.7
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.9e-185 652.9 499 72.3
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.5e-185 652.5 501 71.3
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 3.3e-185 652.1 503 72.2
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 4.3e-185 651.7 482 74.9
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 7.4e-185 651.0 503 72.0
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 9.6e-185 650.6 497 73.0
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 4.8e-184 648.3 492 73.6
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 6.2e-184 647.9 492 71.1
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.1e-183 645.6 485 72.6
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.0e-182 642.9 510 71.2
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.6e-182 642.5 503 70.8
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.4e-182 642.1 499 70.5
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.0e-181 640.6 480 72.3
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 4.2e-180 635.2 493 71.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 2.1e-179 632.9 502 70.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.5e-179 632.1 501 70.3
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.5e-179 632.1 492 70.9
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-178 630.2 525 68.4
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 5.7e-177 624.8 500 69.4
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 7.4e-177 624.4 500 70.0
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 7.4e-177 624.4 500 68.6
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.4e-175 619.4 491 69.9
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.4e-175 619.4 471 73.0
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.1e-175 618.6 504 68.7
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 9.0e-175 617.5 505 67.1
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.2e-174 617.1 504 68.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.5e-174 616.7 492 70.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 2.0e-174 616.3 501 69.1
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 5.9e-174 614.8 508 68.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-173 613.6 521 66.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.8e-173 612.1 508 68.9
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 6.5e-173 611.3 496 67.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.1e-172 610.5 508 68.3
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-172 610.5 494 66.4
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.9e-172 609.8 503 64.4
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.5e-172 609.4 495 67.7
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 2.5e-172 609.4 494 68.2
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.5e-172 608.2 496 68.8
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-171 606.7 508 68.1
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 2.7e-171 605.9 503 66.6
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 2.7e-171 605.9 499 68.3
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 3.5e-171 605.5 508 67.9
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 4.6e-171 605.1 500 68.2
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 7.9e-171 604.4 508 67.1
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.3e-170 602.8 420 77.1
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.5e-169 600.1 503 69.2
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 7.4e-169 597.8 502 67.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.2e-168 596.3 502 67.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.8e-168 595.9 504 67.3
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.8e-168 595.9 440 74.1
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.8e-167 593.2 500 65.2
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 3.8e-165 585.5 487 67.4
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.8e-165 585.5 497 66.2
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.0e-154 550.8 380 76.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.3e-152 541.6 442 69.0
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.2e-148 528.1 491 61.9
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 9.4e-148 527.7 480 62.7
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.6e-147 525.8 354 78.8
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 6.7e-146 521.5 531 59.9
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 7.0e-143 511.5 463 60.3
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 3.1e-135 486.1 481 61.1
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 8.5e-133 478.0 492 57.3
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.2e-131 474.2 452 62.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.0e-126 456.8 489 57.5
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.9e-124 450.3 386 62.2
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 5.6e-124 448.7 401 61.3
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 7.3e-124 448.4 393 66.4
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 9.5e-116 421.4 376 66.8
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 8.6e-109 398.3 488 54.5
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 2.6e-97 360.1 373 60.1
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 2.6e-97 360.1 373 60.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.3e-96 357.8 206 86.4
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.1e-90 338.2 369 51.8
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 5.2e-90 335.9 416 51.4
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 4.4e-89 332.8 253 73.9
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.3e-88 331.3 384 51.3
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.4e-87 327.0 322 55.9
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.8e-83 312.8 219 76.3
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.5e-76 291.2 221 71.9
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 4.3e-76 289.7 377 45.6
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.0e-61 240.4 202 66.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.1e-61 239.6 429 38.2
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.0e-56 225.3 276 51.4
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 9.3e-55 218.8 390 38.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 8.2e-51 205.7 406 36.0
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.9e-48 197.2 164 66.5
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-40 169.5 96 84.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.0e-37 162.2 91 87.9
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.2e-35 154.5 106 66.0
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.8e-35 154.1 132 67.4
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.7e-35 153.7 289 41.5
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.0e-29 135.6 87 78.2
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.7e-22 110.9 185 41.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.3e-21 107.8 122 52.5
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.2e-19 101.3 147 46.9
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.2e-19 101.3 89 57.3
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.7e-12 76.6 60 65.0
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.7e-12 76.6 60 65.0
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 7.5e-12 76.3 71 62.0
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.4e-10 70.1 60 60.0
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 3.5e-09 67.4 44 70.5
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 6.6e-08 63.2 65 56.9
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.3e-07 60.8 191 33.5
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.2e-06 58.9 51 70.6


User provided reference genes

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