Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G007130 Cucumis sativus L. HOM05D007367 ORTHO05D008866 8.3e-88 327.0 166 100.0
MELO3C016218.2 Cucumis melo HOM05D007367 ORTHO05D008866 7.0e-79 297.4 165 92.7
ClCG07G011120 Citrullus lanatus HOM05D007367 ORTHO05D008866 7.5e-73 277.3 165 86.1
Sed0007825 Sechium edule HOM05D007367 ORTHO05D008866 1.7e-61 239.6 165 76.4
CiPaw.11G074200 Carya illinoinensis HOM05D007367 ORTHO05D008866 1.2e-46 190.3 156 61.5
Cfa012305 Carpinus fangiana HOM05D007367 ORTHO05D008866 5.1e-45 184.9 154 62.3
THA.LOC104811080 Tarenaya hassleriana HOM05D007367 ORTHO05D008866 3.3e-44 182.2 153 59.5
Prupe.5G013300 Prunus persica HOM05D007367 ORTHO05D008866 5.6e-44 181.4 155 56.8
Ciclev10012881m.g Citrus clementina HOM05D007367 ORTHO05D008866 9.6e-44 180.6 156 58.3
GSVIVG01036886001 Vitis vinifera HOM05D007367 ORTHO05D008866 1.3e-43 180.3 157 59.2
Actinidia32792 Actinidia chinensis HOM05D007367 ORTHO05D008866 2.1e-43 179.5 152 59.2
CANSAT01G1692 Cannabis sativa HOM05D007367 ORTHO05D008866 2.1e-43 179.5 156 57.1
Duzib068G0439 Durio zibethinus HOM05D007367 ORTHO05D008866 1.8e-42 176.4 151 59.6
QL93p0143_0020 Quercus lobata HOM05D007367 ORTHO05D008866 2.4e-42 176.0 155 56.8
COL.COLO4_16748 Corchorus olitorius HOM05D007367 ORTHO05D008866 4.0e-42 175.3 151 58.3
QL12p003620 Quercus lobata HOM05D007367 ORTHO05D008866 6.9e-42 174.5 155 56.1
Gohir.D12G204000 Gossypium hirsutum HOM05D007367 ORTHO05D008866 9.0e-42 174.1 154 57.8
Gorai.008G218800 Gossypium raimondii HOM05D007367 ORTHO05D008866 2.6e-41 172.6 155 56.8
MD03G1130300 Malus domestica HOM05D007367 ORTHO05D008866 3.4e-41 172.2 155 55.5
Dinv37431 Davidia involucrata HOM05D007367 ORTHO05D008866 4.5e-41 171.8 157 56.7
Potri.004G235300 Populus trichocarpa HOM05D007367 ORTHO05D008866 5.8e-41 171.4 154 56.5
Manes.10G067900 Manihot esculenta HOM05D007367 ORTHO05D008866 7.6e-41 171.0 155 59.4
CARHR226150 Cardamine hirsuta HOM05D007367 ORTHO05D008866 9.9e-41 170.6 161 54.7
TWI38G2056 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 9.9e-41 170.6 155 59.4
Thecc.03G320300 Theobroma cacao HOM05D007367 ORTHO05D008866 2.9e-40 169.1 151 58.3
TWI38G0281 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 3.8e-40 168.7 155 57.4
RcHm_v2.0_Chr7g0215331 Rosa chinensis HOM05D007367 ORTHO05D008866 4.9e-40 168.3 155 55.5
Gohir.A12G201200 Gossypium hirsutum HOM05D007367 ORTHO05D008866 6.4e-40 167.9 154 55.8
Sc07g0008020 Simmondsia chinensis HOM05D007367 ORTHO05D008866 1.1e-39 167.2 165 51.5
arahy.Tifrunner.gnm1.ann1.H9MF1T Arachis hypogaea HOM05D007367 ORTHO05D008866 2.4e-39 166.0 149 53.7
Cc08_g05930 Coffea canephora HOM05D007367 ORTHO05D008866 3.2e-39 165.6 151 57.0
Sp7g17960 Schrenkiella parvula HOM05D007367 ORTHO05D008866 3.2e-39 165.6 160 54.4
TAR374G1177 Trochodendron aralioides HOM05D007367 ORTHO05D008866 5.4e-39 164.9 134 60.4
Lj4g0011102 Lotus japonicus HOM05D007367 ORTHO05D008866 1.6e-38 163.3 155 52.9
FvH4_5g25140 Fragaria vesca HOM05D007367 ORTHO05D008866 2.1e-38 162.9 155 52.9
Lsat_1_v5_gn_5_43721 Lactuca sativa HOM05D007367 ORTHO05D008866 2.1e-38 162.9 161 53.4
Glyma.16G123600 Glycine max HOM05D007367 ORTHO05D008866 3.5e-38 162.2 155 51.6
Carub.0007s2188 Capsella rubella HOM05D007367 ORTHO05D008866 1.3e-37 160.2 160 53.1
Glyma.02G045600 Glycine max HOM05D007367 ORTHO05D008866 1.3e-37 160.2 155 51.0
Nn1g01985 Nelumbo nucifera HOM05D007367 ORTHO05D008866 2.3e-37 159.5 163 52.1
Medtr8g075140 Medicago truncatula HOM05D007367 ORTHO05D008866 3.0e-37 159.1 155 51.0
Aa31LG6G1950 Aethionema arabicum HOM05D007367 ORTHO05D008866 5.1e-37 158.3 152 55.3
VMungo0251G1728 Vigna mungo HOM05D007367 ORTHO05D008866 5.1e-37 158.3 153 50.3
Migut.A00520 Erythranthe guttata HOM05D007367 ORTHO05D008866 3.3e-36 155.6 152 54.6
FAN13G0070 Fragaria x ananassa HOM05D007367 ORTHO05D008866 3.3e-36 155.6 155 51.0
Solyc12g096170.2 Solanum lycopersicum HOM05D007367 ORTHO05D008866 4.3e-36 155.2 154 54.5
AL7G34810 Arabidopsis lyrata HOM05D007367 ORTHO05D008866 7.4e-36 154.5 160 50.6
SalBow4G0967 Salvia bowleyana HOM05D007367 ORTHO05D008866 7.4e-36 154.5 153 51.6
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 7.4e-36 154.5 154 53.9
FAN08G2564 Fragaria x ananassa HOM05D007367 ORTHO05D008866 9.6e-36 154.1 155 50.3
ECA246G3716 Erigeron canadensis HOM05D007367 ORTHO05D008866 1.3e-35 153.7 161 48.4
arahy.Tifrunner.gnm1.ann1.I4PABW Arachis hypogaea HOM05D007367 ORTHO05D008866 3.7e-35 152.1 177 45.8
SGA_v2.0_scaffold89G27372 Striga asiatica HOM05D007367 ORTHO05D008866 3.7e-35 152.1 152 52.6
TPR.G19504 Trifolium pratense HOM05D007367 ORTHO05D008866 1.4e-34 150.2 146 50.7
Atru.chr8.2637 Acer truncatum HOM05D007367 ORTHO05D008866 1.8e-34 149.8 153 53.6
BcaC09g51422 Brassica carinata HOM05D007367 ORTHO05D008866 1.8e-34 149.8 160 50.6
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 3.1e-34 149.1 152 51.3
AT4G19350 Arabidopsis thaliana HOM05D007367 ORTHO05D008866 4.0e-34 148.7 159 49.7
BcaNung01789 Brassica carinata HOM05D007367 ORTHO05D008866 5.3e-34 148.3 160 48.8
C01p13270 Brassica napus HOM05D007367 ORTHO05D008866 6.9e-34 147.9 151 51.7
Lalb_Chr16g0391641 Lupinus albus HOM05D007367 ORTHO05D008866 9.0e-34 147.5 155 47.1
BolC1t01302H Brassica oleracea HOM05D007367 ORTHO05D008866 1.2e-33 147.1 160 49.4
PSO063G4690 Papaver somniferum HOM05D007367 ORTHO05D008866 2.0e-33 146.4 152 53.3
A01p11220 Brassica napus HOM05D007367 ORTHO05D008866 3.4e-33 145.6 160 49.4
CAN.G947.33 Capsicum annuum HOM05D007367 ORTHO05D008866 3.4e-33 145.6 153 51.0
Peaxi162Scf00876g00431 Petunia axillaris HOM05D007367 ORTHO05D008866 7.6e-33 144.4 152 51.3
Aqoxy7G01946 Aquilegia oxysepala HOM05D000773 ORTHO05D008866 1.0e-32 144.1 154 46.8
HanXRQChr02g0034081 Helianthus annuus HOM05D007367 ORTHO05D008866 1.7e-32 143.3 147 50.3
BraA01t01068Z Brassica rapa HOM05D007367 ORTHO05D008866 2.2e-32 142.9 160 48.8
CDE02G0575 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 2.9e-32 142.5 154 50.6
Phvul.003G266000 Phaseolus vulgaris HOM05D007367 ORTHO05D008866 2.9e-32 142.5 170 45.3
MSTRG.25748 Avicennia marina HOM05D007367 ORTHO05D008866 8.4e-32 141.0 152 52.0
EL10Ac8g19394 Beta vulgaris HOM05D007367 ORTHO05D008866 1.2e-30 137.1 152 47.4
Psat4g102200 Pisum sativum HOM05D007367 ORTHO05D008866 4.6e-30 135.2 154 43.5
FAN18G1407 Fragaria x ananassa HOM05D007367 ORTHO05D008866 1.8e-29 133.3 155 46.5
vmacro00097 Vaccinium macrocarpon HOM05D007367 ORTHO05D008866 3.9e-29 132.1 220 36.8
PGR042G2818 Punica granatum HOM05D007367 ORTHO05D008866 5.1e-29 131.7 165 44.8
PSO675G5685 Papaver somniferum HOM05D007367 ORTHO05D008866 4.3e-28 128.6 117 56.4
FAN04G0859 Fragaria x ananassa HOM05D007367 ORTHO05D008866 5.7e-28 128.3 155 45.2
unitig_748.g8147 Utricularia gibba HOM05D007367 ORTHO05D008866 3.7e-27 125.6 163 44.2
Os08g0162500 Oryza sativa ssp. japonica HOM05D007367 ORTHO05D008866 4.8e-27 125.2 147 43.5
HPP92_022724 Vanilla planifolia HOM05D007367 ORTHO05D008866 1.1e-26 124.0 153 41.8
Zm00001eb415480 Zea mays HOM05D007367 ORTHO05D008866 1.8e-26 123.2 157 40.8
DCAR_002187 Daucus carota HOM05D007367 ORTHO05D008866 1.5e-25 120.2 106 60.4
PGSC0003DMG400029288 Solanum tuberosum HOM05D007367 ORTHO05D008866 2.0e-25 119.8 167 46.1
CDE11G0580 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 1.1e-23 114.0 122 50.8
Thecc.04G178000 Theobroma cacao HOM05D000090 ORTHO05D001322 7.4e-20 101.3 96 57.3
Nitab4.5_0011129g0040 Nicotiana tabacum HOM05D007367 ORTHO05D008866 1.3e-19 100.5 133 42.9
Ah.09g231810 Amaranthus hybridus HOM05D007367 ORTHO05D008866 3.7e-19 99.0 163 37.4
Hund14309 Selenicereus undatus HOM05D007367 ORTHO05D008866 6.9e-18 94.7 178 37.1
Thhalv10026808m.g Eutrema salsugineum HOM05D007367 ORTHO05D008866 9.0e-18 94.4 95 50.5
AUR62030407 Chenopodium quinoa HOM05D007367 ORTHO05D008866 3.4e-17 92.4 166 37.3
Haze_08425 Corylus avellana HOM05D007367 ORTHO05D008866 5.9e-17 91.7 92 53.3
Actinidia01248 Actinidia chinensis HOM05D007367 ORTHO05D008866 2.5e-12 76.3 83 45.8
Eucgr.E01150 Eucalyptus grandis HOM05D007367 ORTHO05D008866 2.5e-12 76.3 84 47.6
Nitab4.5_0001913g0180 Nicotiana tabacum HOM05D007367 ORTHO05D008866 4.3e-12 75.5 118 39.0
Atru.chr8.2641 Acer truncatum HOM05D007367 ORTHO05D008866 1.1e-10 70.9 93 43.0
Cpa.g.sc103.6 Carica papaya HOM05D007367 ORTHO05D008866 1.3e-08 63.9 72 48.6
Oeu046774.1 Olea europaea HOM05D007367 ORTHO05D008866 2.9e-08 62.8 61 55.7
Oeu046776.1 Olea europaea HOM05D007367 ORTHO05D008866 2.9e-08 62.8 81 43.2
Gohir.A08G148800 Gossypium hirsutum HOM05D036757 ORTHO05D048069 1.4e-07 60.5 107 41.1
Pp3c23_7640 Physcomitrium patens HOM05D007367 ORTHO05D008866 2.5e-07 59.7 160 25.6
SEGI_16341 Sequoiadendron giganteum HOM05D007367 ORTHO05D008866 2.7e-06 56.2 95 35.8
SHI32769 Sapria himalayana HOM05D000002 ORTHO05D000001 4.7e-06 55.5 59 45.8


User provided reference genes

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