Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 5.3e-154 547.7 293 100.0
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 9.7e-140 500.4 288 92.0
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 9.1e-122 440.7 287 84.3
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 5.4e-82 308.5 348 57.8
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 3.0e-56 223.0 299 50.8
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 2.5e-55 219.9 309 48.2
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 5.6e-55 218.8 299 50.2
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 3.1e-53 213.0 297 52.5
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.1e-50 204.5 317 45.1
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 1.4e-50 204.1 288 49.0
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 3.9e-48 196.1 287 45.3
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 7.3e-47 191.8 293 46.4
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.3e-46 191.0 312 44.2
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 1.3e-46 191.0 294 46.3
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 6.2e-46 188.7 294 45.6
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 6.2e-46 188.7 287 45.3
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 1.4e-45 187.6 306 47.1
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 2.4e-45 186.8 293 45.7
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 2.4e-45 186.8 304 45.7
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 7.6e-44 181.8 287 46.0
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 7.6e-44 181.8 287 46.0
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 7.6e-44 181.8 292 44.2
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 8.4e-43 178.3 297 46.5
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 8.4e-43 178.3 289 45.7
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 1.9e-42 177.2 315 43.5
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 3.2e-42 176.4 303 43.6
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 5.4e-42 175.6 264 44.7
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 7.1e-42 175.3 296 47.3
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 1.2e-41 174.5 283 47.0
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 2.1e-41 173.7 313 42.8
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 4.6e-41 172.6 292 43.8
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 2.3e-40 170.2 292 43.8
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 1.1e-39 167.9 327 42.8
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 1.5e-39 167.5 290 46.9
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 1.5e-39 167.5 295 44.4
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 3.3e-39 166.4 335 41.2
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 5.6e-39 165.6 283 44.9
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 5.6e-39 165.6 279 45.5
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 7.4e-39 165.2 306 41.2
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 1.3e-38 164.5 284 44.0
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 2.1e-38 163.7 289 42.6
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 6.2e-38 162.2 293 43.3
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 1.1e-37 161.4 288 43.8
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 2.4e-37 160.2 307 42.3
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 3.1e-37 159.8 300 45.0
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 9.0e-37 158.3 288 43.1
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 2.6e-36 156.8 286 45.1
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 4.5e-36 156.0 299 43.5
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 5.8e-36 155.6 280 42.1
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 1.0e-35 154.8 286 40.6
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 1.0e-35 154.8 293 42.7
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.9e-35 152.5 306 44.4
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 8.4e-35 151.8 289 39.1
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 2.1e-33 147.1 319 37.9
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.0e-32 144.8 294 42.2
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 8.7e-32 141.7 283 39.9
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 3.3e-31 139.8 297 43.4
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.3e-31 139.4 315 42.2
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 7.4e-31 138.7 285 40.4
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 9.6e-31 138.3 291 41.6
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 1.3e-30 137.9 324 36.7
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 6.2e-30 135.6 290 39.3
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 9.0e-29 131.7 298 40.3
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 1.5e-28 131.0 305 38.0
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 1.0e-27 128.3 288 37.2
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 1.3e-27 127.9 294 41.2
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 2.2e-27 127.1 293 40.6
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 1.1e-26 124.8 292 36.6
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 1.9e-26 124.0 318 37.4
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 4.2e-26 122.9 319 36.1
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 5.5e-26 122.5 310 36.5
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 9.3e-26 121.7 292 36.3
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 9.3e-26 121.7 292 36.3
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 9.3e-26 121.7 305 38.0
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 1.2e-25 121.3 277 36.8
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 7.9e-25 118.6 308 35.7
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 1.8e-24 117.5 270 37.0
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 3.0e-24 116.7 289 35.3
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 2.5e-23 113.6 325 34.5
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 1.3e-22 111.3 333 32.4
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 1.6e-22 110.9 318 34.0
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 2.2e-22 110.5 294 36.1
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 4.8e-22 109.4 300 38.3
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 6.3e-22 109.0 255 36.1
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 6.3e-22 109.0 285 38.6
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 3.1e-21 106.7 281 34.2
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 1.5e-20 104.4 368 32.9
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 3.8e-19 99.8 242 35.5
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 6.5e-19 99.0 103 51.5
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 8.5e-19 98.6 69 72.5
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 1.2e-17 94.7 207 39.6
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 3.0e-16 90.1 287 32.4
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 4.3e-15 86.3 141 44.0
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 9.7e-15 85.1 92 50.0
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.3e-14 84.7 96 46.9
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 1.7e-14 84.3 269 32.3
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 1.7e-14 84.3 73 60.3
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 3.7e-14 83.2 98 49.0
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 6.3e-14 82.4 98 48.0
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 8.2e-14 82.0 300 35.0
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 8.2e-14 82.0 98 48.0
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 1.4e-13 81.3 102 46.1
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 1.8e-13 80.9 101 47.5
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 2.4e-13 80.5 113 46.9
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 2.6e-12 77.0 290 33.8
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 5.9e-12 75.9 293 34.8
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 1.7e-11 74.3 95 47.4
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 1.7e-11 74.3 90 43.3
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 2.2e-11 73.9 104 41.3
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 2.9e-11 73.6 100 44.0
HPP92_022730 Vanilla planifolia HOM05D005197 ORTHO05D006263 2.9e-11 73.6 280 27.9
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 8.5e-11 72.0 65 53.8
VMungo0464G0602 Vigna mungo HOM05D005197 ORTHO05D006263 1.1e-10 71.6 199 33.2
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 1.9e-10 70.9 90 41.1
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 2.5e-10 70.5 238 32.8
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 1.2e-09 68.2 62 56.5
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 1.2e-09 68.2 105 41.0
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 6.1e-09 65.9 50 68.0
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 1.0e-08 65.1 102 41.2
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 6.7e-08 62.4 103 39.8
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 2.0e-07 60.8 95 38.9
Eucgr.L01782 Eucalyptus grandis HOM05D005197 ORTHO05D006263 4.4e-07 59.7 42 73.8
SalBow2G3639 Salvia bowleyana HOM05D002402 ORTHO05D002633 7.4e-07 58.9 64 46.9
arahy.Tifrunner.gnm1.ann1.G7W534 Arachis hypogaea HOM05D005197 ORTHO05D006263 1.7e-06 57.8 86 40.7
arahy.Tifrunner.gnm1.ann1.JB60CZ Arachis hypogaea HOM05D005197 ORTHO05D006263 1.7e-06 57.8 86 40.7
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 1.7e-06 57.8 76 42.1
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 2.2e-06 57.4 90 40.0
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 3.7e-06 56.6 66 48.5
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 6.3e-06 55.8 235 32.3


User provided reference genes

Program Settings