Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 1.1e-66 256.5 135 100.0
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 4.1e-53 211.5 130 88.5
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 3.8e-38 161.8 131 74.0
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 3.9e-27 125.2 131 60.3
Sed0007502 Sechium edule HOM05D007727 ORTHO05D009078 1.1e-24 117.1 132 56.8
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 1.4e-13 80.1 113 45.1
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 9.3e-13 77.4 128 42.2
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 2.3e-11 72.8 115 40.0
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 3.0e-11 72.4 119 42.9
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 3.9e-11 72.0 109 44.0
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 5.1e-11 71.6 113 42.5
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 6.7e-11 71.2 130 41.5
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 1.5e-10 70.1 105 42.9
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.9e-10 69.7 122 41.0
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 2.5e-10 69.3 81 45.7
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 3.3e-10 68.9 114 41.2
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 5.6e-10 68.2 81 45.7
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 1.3e-09 67.0 123 37.4
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.6e-09 66.6 110 38.2
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.6e-09 66.6 110 38.2
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 2.1e-09 66.2 117 43.6
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.1e-09 66.2 126 33.3
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 2.1e-09 66.2 131 38.2
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 2.8e-09 65.9 110 43.6
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 3.7e-09 65.5 120 39.2
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 1.1e-08 63.9 124 34.7
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 1.1e-08 63.9 83 43.4
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.4e-08 63.5 108 42.6
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.4e-08 63.5 125 31.2
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 1.8e-08 63.2 108 42.6
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.8e-08 63.2 105 44.8
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.8e-08 63.2 105 44.8
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.8e-08 63.2 105 44.8
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.8e-08 63.2 108 42.6
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.8e-08 63.2 120 38.3
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 5.3e-08 61.6 115 36.5
Medtr8g099475 Medicago truncatula HOM05D007727 ORTHO05D009078 5.3e-08 61.6 88 44.3
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 6.9e-08 61.2 95 40.0
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 9.0e-08 60.8 60 53.3
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 9.0e-08 60.8 113 37.2
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 1.5e-07 60.1 115 37.4
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.4e-07 58.9 112 37.5
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.5e-07 58.5 122 36.1
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 4.5e-07 58.5 46 54.3
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 4.5e-07 58.5 118 34.7
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 4.5e-07 58.5 94 41.5
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 5.8e-07 58.2 105 41.9
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 5.8e-07 58.2 138 34.1
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.8e-07 58.2 46 54.3
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.8e-07 58.2 46 54.3
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 5.8e-07 58.2 127 33.1
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.6e-07 57.8 131 33.6
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.6e-07 57.8 131 33.6
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.0e-06 57.4 127 33.1
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.0e-06 57.4 113 36.3
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.0e-06 57.4 122 31.1
CARHR231260 Cardamine hirsuta HOM05D009622 ORTHO05D011757 1.3e-06 57.0 91 38.5
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 1.3e-06 57.0 105 37.1
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 1.7e-06 56.6 125 35.2
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.7e-06 56.6 42 59.5
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.7e-06 56.6 107 33.6
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.2e-06 56.2 105 40.0
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.2e-06 56.2 127 33.9
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.2e-06 56.2 124 33.9
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.2e-06 56.2 117 35.9
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.9e-06 55.1 100 37.0
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.9e-06 55.1 100 37.0
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.9e-06 55.1 95 40.0
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 4.9e-06 55.1 126 32.5
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 4.9e-06 55.1 128 36.7
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.9e-06 55.1 116 34.5
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 4.9e-06 55.1 106 37.7
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 4.9e-06 55.1 83 38.6
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 6.5e-06 54.7 106 34.9
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 6.5e-06 54.7 106 37.7
Solyc08g082380.1 Solanum lycopersicum HOM05D011491 ORTHO05D009078 8.4e-06 54.3 119 33.6


User provided reference genes

Program Settings