Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 7.6e-84 313.9 174 100.0
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 7.6e-68 260.8 174 83.3
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.7e-63 243.8 173 75.1
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.3e-62 243.4 170 76.5
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.1e-53 213.8 172 70.3
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 9.7e-47 190.7 171 63.2
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.7e-46 189.9 138 74.6
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.6e-41 173.3 125 74.4
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.6e-41 173.3 125 74.4
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.6e-41 173.3 125 74.4
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 4.7e-33 145.2 177 51.4
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 3.4e-31 139.0 159 49.7
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 5.7e-31 138.3 172 48.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 7.5e-31 137.9 159 49.1
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.3e-30 137.1 159 49.7
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 3.7e-30 135.6 174 48.3
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 4.8e-30 135.2 177 52.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.1e-29 134.0 181 48.1
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.1e-29 134.0 178 47.8
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.4e-29 132.9 155 52.9
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 7.0e-29 131.3 154 52.6
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 7.0e-29 131.3 154 52.6
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.7e-28 127.9 163 50.3
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 7.7e-28 127.9 163 50.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 7.7e-28 127.9 174 47.1
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.0e-27 127.5 163 50.3
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 2.3e-27 126.3 163 50.3
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 2.9e-27 125.9 174 47.7
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.9e-26 123.2 155 49.0
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 5.5e-26 121.7 182 44.5
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 7.2e-26 121.3 174 44.8
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.2e-25 120.6 157 46.5
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.2e-25 120.6 173 45.7
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.6e-25 120.2 169 46.2
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-25 119.8 157 47.1
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 3.6e-25 119.0 161 44.1
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 3.6e-25 119.0 161 44.1
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 6.1e-25 118.2 169 49.1
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 6.1e-25 118.2 151 51.0
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.3e-24 116.3 157 45.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.3e-24 116.3 157 45.9
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.0e-24 115.9 175 45.1
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 6.8e-24 114.8 173 43.4
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.2e-23 114.0 162 43.2
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.5e-23 113.6 162 45.1
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 3.4e-23 112.5 168 48.8
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.4e-23 112.5 156 50.6
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 4.4e-23 112.1 163 44.2
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 4.4e-23 112.1 156 46.8
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.3e-22 110.5 181 47.5
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.3e-22 110.5 170 48.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.3e-22 110.5 168 47.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.2e-22 109.8 176 45.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.7e-22 109.0 172 44.2
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.9e-22 108.6 150 46.0
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.9e-22 108.6 150 46.0
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 8.3e-22 107.8 171 40.9
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.1e-21 107.5 160 45.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.8e-21 106.7 154 46.1
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 2.4e-21 106.3 156 45.5
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.4e-21 106.3 180 40.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.0e-21 104.8 160 44.4
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.6e-20 103.6 184 40.8
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.6e-20 103.6 168 41.7
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.7e-20 102.8 183 40.4
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.5e-20 102.4 190 39.5
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.5e-20 102.4 190 39.5
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 3.5e-20 102.4 178 42.1
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 5.9e-20 101.7 161 42.2
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 5.9e-20 101.7 167 42.5
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.0e-19 100.9 166 45.2
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.3e-19 100.5 180 40.6
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.3e-19 100.5 147 48.3
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.7e-19 100.1 181 40.3
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.7e-19 100.1 168 44.0
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.3e-19 99.8 181 42.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.9e-19 99.4 180 41.1
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.8e-19 99.0 196 40.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 3.8e-19 99.0 147 48.3
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 5.0e-19 98.6 173 43.9
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 5.0e-19 98.6 170 43.5
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 5.0e-19 98.6 190 36.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 6.6e-19 98.2 183 39.3
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 6.6e-19 98.2 174 43.1
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 8.6e-19 97.8 176 39.8
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.3e-18 95.9 172 39.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 3.3e-18 95.9 157 41.4
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 3.3e-18 95.9 168 39.9
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.6e-18 95.1 179 38.5
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 5.6e-18 95.1 178 39.3
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.6e-18 95.1 164 41.5
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 7.3e-18 94.7 157 43.3
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 9.5e-18 94.4 155 45.2
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.2e-17 94.0 161 44.1
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-17 93.6 183 37.7
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.1e-17 93.2 160 44.4
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.1e-17 93.2 160 44.4
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.1e-17 93.2 167 40.7
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.6e-17 92.4 175 40.6
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 3.6e-17 92.4 164 38.4
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.1e-17 91.7 175 41.1
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 6.1e-17 91.7 180 39.4
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.0e-16 90.9 170 43.5
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.0e-16 90.9 178 38.2
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.4e-16 90.5 181 37.6
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.8e-16 90.1 174 39.1
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 3.0e-16 89.4 184 37.0
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 3.0e-16 89.4 184 38.0
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.0e-16 89.0 161 47.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 4.0e-16 89.0 175 38.3
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.0e-16 89.0 182 37.9
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.2e-16 88.6 175 41.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 5.2e-16 88.6 153 42.5
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 6.8e-16 88.2 169 41.4
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.2e-15 87.4 165 38.8
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.2e-15 87.4 171 36.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.2e-15 87.4 156 39.7
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 7.5e-15 84.7 169 39.6
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 9.8e-15 84.3 188 36.2
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.1e-13 80.9 170 37.6
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.1e-13 79.0 175 37.1
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.7e-12 76.3 117 44.4
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 3.5e-12 75.9 186 38.7
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 7.8e-12 74.7 170 35.9
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 3.3e-10 69.3 62 58.1
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.2e-09 67.4 47 72.3
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 4.7e-09 65.5 165 33.3
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.0e-08 62.4 146 33.6
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.0e-08 62.4 117 36.8
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 6.8e-08 61.6 172 33.1
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 8.9e-08 61.2 157 36.3
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 8.9e-08 61.2 157 36.3
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.5e-07 60.5 137 39.4
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 2.0e-07 60.1 125 40.8
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 9.8e-07 57.8 39 69.2
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 4.9e-06 55.5 77 42.9
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 6.4e-06 55.1 77 42.9


User provided reference genes

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