Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 5.7e-297 1023.5 511 100.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 4.9e-288 993.8 511 96.7
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.3e-274 948.3 534 89.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 9.5e-260 899.8 512 88.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 7.9e-214 747.3 512 73.6
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.5e-212 742.3 514 73.9
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.7e-212 740.3 514 73.5
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.6e-211 739.6 509 73.5
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.4e-210 735.7 509 72.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.3e-210 734.6 514 73.3
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.0e-208 730.3 515 72.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.3e-208 729.9 511 71.8
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-208 728.8 523 72.1
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 9.4e-207 723.8 512 72.3
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.6e-206 721.8 513 71.3
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.0e-205 720.3 511 70.8
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.7e-205 717.6 509 70.5
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 6.7e-205 717.6 510 72.7
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.1e-204 716.8 511 71.2
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 7.4e-204 714.1 511 69.9
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.8e-203 712.2 511 69.7
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.8e-203 711.4 511 69.5
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 5.3e-202 708.0 509 69.2
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 6.9e-202 707.6 515 70.7
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 6.9e-202 707.6 512 71.9
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 9.1e-202 707.2 508 69.5
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.4e-201 705.3 509 68.6
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.5e-201 704.9 509 68.4
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.0e-200 703.7 510 69.8
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.3e-200 703.4 509 70.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 3.8e-200 701.8 513 69.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-199 699.9 517 70.2
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.5e-199 699.1 510 67.8
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.5e-199 699.1 512 68.4
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 4.2e-199 698.4 509 68.8
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 4.2e-199 698.4 515 70.9
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.2e-199 697.6 514 69.8
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.2e-199 697.6 514 69.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-198 696.8 510 68.6
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-198 696.8 509 68.2
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.6e-198 696.4 511 68.7
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.6e-198 696.4 510 68.4
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 3.6e-198 695.3 509 70.3
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 2.3e-197 692.6 510 67.8
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 3.9e-197 691.8 512 68.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.1e-196 690.3 511 68.9
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.2e-195 686.0 510 67.6
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.8e-195 685.6 512 67.8
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 3.7e-195 685.3 511 69.1
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.8e-195 684.9 511 67.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.4e-194 682.6 511 67.1
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.1e-194 682.2 511 68.5
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 3.1e-194 682.2 514 68.3
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 5.3e-194 681.4 514 68.3
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.6e-193 679.9 513 66.9
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.0e-193 679.5 573 62.7
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 3.5e-193 678.7 513 66.1
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 7.7e-193 677.6 512 67.8
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.2e-192 676.0 511 67.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.8e-192 675.2 515 67.0
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 6.5e-192 674.5 511 67.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.5e-191 672.5 514 66.7
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 5.5e-191 671.4 508 67.7
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 5.5e-191 671.4 514 66.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 5.5e-191 671.4 463 72.1
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 9.4e-191 670.6 512 67.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.6e-190 669.8 512 66.8
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.1e-190 669.5 594 60.4
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.7e-190 669.1 512 67.2
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 6.1e-190 667.9 512 65.4
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.8e-189 666.4 511 66.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.7e-188 660.6 520 65.0
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.8e-187 658.3 510 65.7
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 6.3e-187 657.9 512 66.0
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.1e-186 657.1 517 65.4
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.1e-186 655.6 512 65.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 7.0e-186 654.4 505 66.3
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.7e-185 651.0 513 65.3
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.0e-184 650.6 526 65.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 3.8e-184 648.7 432 72.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.5e-183 646.7 512 64.8
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.0e-180 636.3 498 65.5
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.7e-179 633.3 506 63.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.7e-179 632.1 507 64.5
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.4e-178 630.2 555 60.5
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 5.4e-178 628.2 462 69.5
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.0e-177 626.3 511 63.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.9e-176 622.5 506 62.8
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 5.0e-176 621.7 500 65.4
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 8.5e-176 620.9 547 59.8
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.1e-174 616.3 463 66.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.6e-174 615.5 509 63.3
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-174 615.1 439 70.2
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.7e-171 606.7 511 62.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.7e-171 606.7 436 70.0
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.2e-171 606.3 510 62.4
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.4e-170 603.6 514 62.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.2e-170 600.9 422 71.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 2.1e-166 589.7 506 60.5
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 4.7e-166 588.6 498 63.3
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.8e-162 576.6 554 57.0
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.4e-162 576.2 437 67.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.5e-159 566.2 461 62.0
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.6e-156 556.2 355 77.2
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 9.8e-148 527.7 379 70.7
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 3.2e-146 522.7 510 56.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-144 517.3 371 70.1
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.5e-143 513.8 473 55.2
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.6e-143 511.9 415 63.6
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.6e-140 503.1 448 59.8
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.3e-126 457.6 384 61.5
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 6.0e-121 438.7 530 45.7
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 9.0e-117 424.9 468 50.0
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.9e-116 421.4 371 59.0
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.1e-112 409.1 496 48.0
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 7.4e-111 405.2 439 48.7
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.8e-110 403.3 391 57.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.6e-102 377.5 286 64.3
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 7.6e-100 368.6 327 60.6
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.5e-84 317.8 686 35.1
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.6e-76 291.2 471 38.2
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.0e-72 276.6 475 39.8
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.7e-70 270.0 241 61.0
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.4e-69 267.3 462 37.7
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 5.9e-60 236.1 217 59.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.8e-57 227.3 370 36.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 4.4e-55 219.9 470 33.2
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.1e-53 213.4 164 68.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 9.8e-39 165.6 213 42.3
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.3e-38 162.5 102 77.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.3e-35 155.2 246 37.8
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-33 148.3 92 77.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 3.4e-31 140.6 134 59.0
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.7e-25 120.2 344 26.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.4e-24 118.6 108 59.3
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 9.9e-15 85.9 60 73.3
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.4e-13 80.1 44 77.3
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.6e-12 78.6 49 81.6
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 9.6e-10 69.3 66 60.6
Sc01g0008120 Simmondsia chinensis HOM05D000686 ORTHO05D000512 2.4e-08 64.7 416 24.8
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 8.4e-06 56.2 81 42.0


User provided reference genes

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